An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction

Immunisation With Immunodominant Linear B Cell Epitopes Vaccine of Manganese Transport Protein C Confers Protection against Staphylococcus aureus Infection

(2016) Hui-Jie Yang et al.   PLoS One

Toxoplasma gondii: Vaccination with a DNA vaccine encoding T- and B-cell epitopes of SAG1, GRA2, GRA7 and ROP16 elicits protection against acute toxoplasmosis in mice

(2015) Aiping Cao et al.   VACCINE

Predicting linear B-cell epitopes using amino acid anchoring pair composition

(2015) Weike Shen et al.   BioData Mining

PEASE: predicting B-cell epitopes utilizing antibody sequence

(2014) I. Sela-Culang et al.   BIOINFORMATICS

Improving B-cell epitope prediction and its application to global antibody-antigen docking

(2014) Konrad Krawczyk et al.   BIOINFORMATICS

EPMLR: sequence-based linear B-cell epitope prediction method using multiple linear regression

(2014) Yao Lian et al.   BMC BIOINFORMATICS

A high-throughput shotgun mutagenesis approach to mapping B-cell antibody epitopes

(2014) Edgar Davidson et al.   IMMUNOLOGY

Current approaches to fine mapping of antigen-antibody interactions

(2014) W. Mark Abbott et al.   IMMUNOLOGY

A combinatorial mutagenesis approach for functional epitope mapping on phage-displayed target antigen

(2014) Yanelys Cabrera Infante et al.   mAbs

B-cell epitopes of antigenic proteins inLeishmania infantum: anin silicoanalysis

(2014) L. M. Assis et al.   PARASITE IMMUNOLOGY

Using a Combined Computational-Experimental Approach to Predict Antibody-Specific B Cell Epitopes

(2014) Inbal Sela-Culang et al.   STRUCTURE

Crystal structure reveals conservation of amyloid-β conformation recognized by 3D6 following humanization to bapineuzumab

(2014) Hadar Feinberg et al.   Alzheimers Research & Therapy

Potent Dengue Virus Neutralization by a Therapeutic Antibody with Low Monovalent Affinity Requires Bivalent Engagement

(2014) Melissa A. Edeling et al.   PLoS Pathogens

Outer Surface Protein C Peptide Derived from Borrelia burgdorferi Sensu Stricto as a Target for Serodiagnosis of Early Lyme Disease

(2013) Paul M. Arnaboldi et al.   Clinical and Vaccine Immunology

Protein crystallography and fragment-based drug design

(2013) Rocco Caliandro et al.   Future Medicinal Chemistry

Rhipicephalus microplus lipocalins (LRMs): Genomic identification and analysis of the bovine immune response using in silico predicted B and T cell epitopes

(2013) Manuel Rodriguez-Valle et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Human antibodies that neutralize respiratory droplet transmissible H5N1 influenza viruses

(2013) Natalie J. Thornburg et al.   JOURNAL OF CLINICAL INVESTIGATION

Improved Method for Linear B-Cell Epitope Prediction Using Antigen’s Primary Sequence

(2013) Harinder Singh et al.   PLoS One

The Structural Basis of Antibody-Antigen Recognition

(2013) Inbal Sela-Culang et al.   Frontiers in Immunology

Multistructural hot spot characterization with FTProd

(2012) Lane Votapka et al.   BIOINFORMATICS

Recent developments and applications of saturation transfer difference nuclear magnetic resonance (STD NMR) spectroscopy

(2012) Jane L. Wagstaff et al.   Molecular BioSystems

Structural analysis of B-cell epitopes in antibody:protein complexes

(2012) Jens Vindahl Kringelum et al.   MOLECULAR IMMUNOLOGY

BEST: Improved Prediction of B-Cell Epitopes from Antigen Sequences

(2012) Jianzhao Gao et al.   PLoS One

PepMapper: A Collaborative Web Tool for Mapping Epitopes from Affinity-Selected Peptides

(2012) Wenhan Chen et al.   PLoS One

SVMTriP: A Method to Predict Antigenic Epitopes Using Support Vector Machine to Integrate Tri-Peptide Similarity and Propensity

(2012) Bo Yao et al.   PLoS One

Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20

(2012) Dustin M. McCraw et al.   VIROLOGY

Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking

(2012) Jens Vindahl Kringelum et al.   PLoS Computational Biology

Macromolecular NMR spectroscopy for the non-spectroscopist

(2011) Ann H. Kwan et al.   FEBS Journal

Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness

(2011) Liang Zhao et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

LocaPep: Localization of Epitopes on Protein Surfaces Using Peptides from Phage Display Libraries

(2011) Luis F. Pacios et al.   Journal of Chemical Information and Modeling

Bioinformatics Resources and Tools for Phage Display

(2011) Jian Huang et al.   MOLECULES

Impact of Immunization Technology and Assay Application on Antibody Performance – A Systematic Comparative Evaluation

(2011) Michael C. Brown et al.   PLoS One

Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin

(2011) J. R. R. Whittle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results

(2010) Shide Liang et al.   BMC BIOINFORMATICS

Evaluation of spatial epitope computational tools based on experimentally-confirmed dataset for protein antigens

(2010) XiaoLian Xu et al.   CHINESE SCIENCE BULLETIN

Epitope Discovery and Their Use in Peptide Based Vaccines

(2010) Nadine L. Dudek et al.   CURRENT PHARMACEUTICAL DESIGN

IEDB-3D: structural data within the immune epitope database

(2010) J. Ponomarenko et al.   NUCLEIC ACIDS RESEARCH

Use of amino acid composition to predict epitope residues of individual antibodies

(2010) Shinji Soga et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Mining for the antibody-antigen interacting associations that predict the B cell epitopes

(2010) Liang Zhao et al.   BMC STRUCTURAL BIOLOGY

Epitopia: a web-server for predicting B-cell epitopes

(2009) Nimrod D Rubinstein et al.   BMC BIOINFORMATICS

SEPPA: a computational server for spatial epitope prediction of protein antigens

(2009) Jing Sun et al.   NUCLEIC ACIDS RESEARCH

Epitope mapping by amide hydrogen/deuterium exchange coupled with immobilization of antibody, on-line proteolysis, liquid chromatography and mass spectrometry

(2009) Stephen J. Coales et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure

(2008) Michael J. Sweredoski et al.   BIOINFORMATICS

Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis

(2008) Yan Xin Huang et al.   BMC BIOINFORMATICS

PEPOP: Computational design of immunogenic peptides

(2008) Violaine Moreau et al.   BMC BIOINFORMATICS

ElliPro: a new structure-based tool for the prediction of antibody epitopes

(2008) Julia Ponomarenko et al.   BMC BIOINFORMATICS

Predicting linear B‐cell epitopes using string kernels

(2008) Yasser EL‐Manzalawy et al.   JOURNAL OF MOLECULAR RECOGNITION

A machine-learning approach for predicting B-cell epitopes

(2008) Nimrod D. Rubinstein et al.   MOLECULAR IMMUNOLOGY

Computational characterization of B-cell epitopes

(2007) Nimrod D. Rubinstein et al.   MOLECULAR IMMUNOLOGY

Benchmarking B cell epitope prediction: Underperformance of existing methods

(2004) Martin J. Blythe et al.   PROTEIN SCIENCE