BEST: Improved Prediction of B-Cell Epitopes from Antigen Sequences

Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors

(2011) Ke Chen et al.   BIOINFORMATICS

Sequence-based prediction of protein crystallization, purification and production propensity

(2011) Marcin J. Mizianty et al.   BIOINFORMATICS

Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature

(2011) Wen Zhang et al.   BMC BIOINFORMATICS

Structural Protein Descriptors in 1-Dimension and their Sequence-Based Predictions

(2011) Lukasz Kurgan et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

ATPsite: sequence-based prediction of ATP-binding residues

(2011) Ke Chen et al.   Proteome Science

Advances of bioinformatics tools applied in virus epitopes prediction

(2011) Ping Chen et al.   VIROLOGICA SINICA

Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources

(2010) Marcin J. Mizianty et al.   BIOINFORMATICS

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results

(2010) Shide Liang et al.   BMC BIOINFORMATICS

SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction

(2010) Lawrence JK Wee et al.   BMC GENOMICS

Mining for the antibody-antigen interacting associations that predict the B cell epitopes

(2010) Liang Zhao et al.   BMC STRUCTURAL BIOLOGY

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

(2009) Marcin J Mizianty et al.   BMC BIOINFORMATICS

Epitopia: a web-server for predicting B-cell epitopes

(2009) Nimrod D Rubinstein et al.   BMC BIOINFORMATICS

Accurate sequence-based prediction of catalytic residues

(2008) Tuo Zhang et al.   BIOINFORMATICS

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure

(2008) Michael J. Sweredoski et al.   BIOINFORMATICS

Predicting linear B‐cell epitopes using string kernels

(2008) Yasser EL‐Manzalawy et al.   JOURNAL OF MOLECULAR RECOGNITION

A machine-learning approach for predicting B-cell epitopes

(2008) Nimrod D. Rubinstein et al.   MOLECULAR IMMUNOLOGY

COBEpro: a novel system for predicting continuous B-cell epitopes

(2008) Michael J. Sweredoski et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network

(2008) Eshel Faraggi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

An introduction to epitope prediction methods and software

(2008) Xingdong Yang et al.   REVIEWS IN MEDICAL VIROLOGY

Benchmarking B cell epitope prediction: Underperformance of existing methods

(2004) Martin J. Blythe et al.   PROTEIN SCIENCE