High-Throughput Sequencing Reveals H2O2 Stress-Associated MicroRNAs and a Potential Regulatory Network in Brachypodium distachyon Seedlings

Expression profiling of marker genes responsive to the defence-associated phytohormones salicylic acid, jasmonic acid and ethylene in Brachypodium distachyon

(2016) Yusuke Kouzai et al.   BMC PLANT BIOLOGY

Cross Talk between H2O2 and Interacting Signal Molecules under Plant Stress Response

(2016) Ina Saxena et al.   Frontiers in Plant Science

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

Integrative proteome analysis of Brachypodium distachyon roots and leaves reveals a synergetic responsive network under H 2 O 2 stress

(2015) Yan-Wei Bian et al.   Journal of Proteomics

miR408is involved in abiotic stress responses in Arabidopsis

(2015) Chao Ma et al.   PLANT JOURNAL

Identification of miRNAs involved in pear fruit development and quality

(2014) Jun Wu et al.   BMC GENOMICS

Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L.

(2014) Dong-Wen Lv et al.   BMC GENOMICS

Deep sequencing on a genome-wide scale reveals diverse stage-specific microRNAs in cambium during dormancy-release induced by chilling in poplar

(2014) Qi Ding et al.   BMC PLANT BIOLOGY

Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress

(2014) Henry D. Priest et al.   PLoS One

Identification of UV-B-induced microRNAs in wheat

(2013) B. Wang et al.   GENETICS AND MOLECULAR RESEARCH

Proteome and Phosphoproteome Characterization Reveals New Response and Defense Mechanisms ofBrachypodium distachyonLeaves under Salt Stress

(2013) Dong-Wen Lv et al.   MOLECULAR & CELLULAR PROTEOMICS

Redox Modulation of Plant Developmental Regulators from the Class I TCP Transcription Factor Family

(2013) I. L. Viola et al.   PLANT PHYSIOLOGY

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

(2013) Dong-Hoon Jeong et al.   GENOME BIOLOGY

Addressing the Role of microRNAs in Reprogramming Leaf Growth during Drought Stress in Brachypodium distachyon

(2012) Edoardo Bertolini et al.   Molecular Plant

Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis

(2012) Yue Li et al.   NUCLEIC ACIDS RESEARCH

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Toward microRNA-mediated gene regulatory networks in plants

(2011) Y. Meng et al.   BRIEFINGS IN BIOINFORMATICS

Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs

(2011) Vesselin Baev et al.   GENOMICS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression

(2011) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

The salt- and drought-inducible poplar GRAS protein SCL7 confers salt and drought tolerance in Arabidopsis thaliana

(2010) Hong-Shuang Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

miR171 Family Members are Involved in Drought Response in Solanum tuberosum

(2010) Eul-Won Hwang et al.   JOURNAL OF PLANT BIOLOGY

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Arabidopsis RING E3 Ligase XBAT32 Regulates Lateral Root Production through Its Role in Ethylene Biosynthesis

(2010) M. E. Prasad et al.   PLANT PHYSIOLOGY

The MicroRNA159-Regulated GAMYB-like Genes Inhibit Growth and Promote Programmed Cell Death in Arabidopsis

(2010) M. M. Alonso-Peral et al.   PLANT PHYSIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

UV-B-responsive microRNAs in Populus tremula

(2009) Xiaoyun Jia et al.   JOURNAL OF PLANT PHYSIOLOGY

The CCAAT-binding complex coordinates the oxidative stress response in eukaryotes

(2009) Marcel Thön et al.   NUCLEIC ACIDS RESEARCH

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

Hydrogen Peroxide in Plants: a Versatile Molecule of the Reactive Oxygen Species Network

(2008) Li-Juan Quan et al.   Journal of Integrative Plant Biology

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL