Characterization of Outer Membrane Proteome of Akkermansia muciniphila Reveals Sets of Novel Proteins Exposed to the Human Intestine

Akkermansia muciniphila and its role in regulating host functions

(2017) Muriel Derrien et al.   MICROBIAL PATHOGENESIS

Architecture of the type IVa pilus machine

(2016) Yi-Wei Chang et al.   SCIENCE

Akkermansia muciniphila Adheres to Enterocytes and Strengthens the Integrity of the Epithelial Cell Layer

(2015) Justus Reunanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Surface proteins of Propionibacterium freudenreichii are involved in its anti-inflammatory properties

(2015) Caroline Le Maréchal et al.   Journal of Proteomics

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Proteomic Profiling of the Outer Membrane Fraction of the Obligate Intracellular Bacterial Pathogen Ehrlichia ruminantium

(2015) Amal Moumène et al.   PLoS One

Discovery of intramolecular trans-sialidases in human gut microbiota suggests novel mechanisms of mucosal adaptation

(2015) Louise E. Tailford et al.   Nature Communications

Analysis of the Outer Membrane Proteome and Secretome of Bacteroides fragilis Reveals a Multiplicity of Secretion Mechanisms

(2015) Marlena M. Wilson et al.   PLoS One

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Preferential Packing of Acidic Glycosidases and Proteases into Bacteroides Outer Membrane Vesicles

(2014) W. Elhenawy et al.   mBio

Functional Mapping of PilF and PilQ in the Pseudomonas aeruginosa Type IV Pilus System

(2013) Jason Koo et al.   BIOCHEMISTRY

Microbe-Host Interactions: Structure and Role of Gram-Negative Bacterial Porins

(2013) Stefania Galdiero et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

An increase in theAkkermansiaspp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice

(2013) Na-Ri Shin et al.   GUT

Phylogenetic Analysis of Dysbiosis in Ulcerative Colitis During Remission

(2013) Mirjana Rajilić-Stojanović et al.   INFLAMMATORY BOWEL DISEASES

High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment

(2013) Grégory Dubourg et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium

(2013) Jantiya Isanapong et al.   ISME Journal

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics

(2013) A. Rupakula et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using Recombinant Lactococci as an Approach to Dissect the Immunomodulating Capacity of Surface Piliation in Probiotic Lactobacillus rhamnosus GG

(2013) Ingemar von Ossowski et al.   PLoS One

Extracellular Vesicles Derived from Gut Microbiota, Especially Akkermansia muciniphila, Protect the Progression of Dextran Sulfate Sodium-Induced Colitis

(2013) Chil-sung Kang et al.   PLoS One

Rhs proteins from diverse bacteria mediate intercellular competition

(2013) S. Koskiniemi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

(2013) A. Everard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic analysis of outer membrane vesicles from the probiotic strainEscherichia coliNissle 1917

(2013) Laura Aguilera et al.   PROTEOMICS

Autotransporter secretion: varying on a theme

(2013) Jan Grijpstra et al.   RESEARCH IN MICROBIOLOGY

PVC bacteria: variation of, but not exception to, the Gram-negative cell plan

(2013) Damien P. Devos   TRENDS IN MICROBIOLOGY

Characterization of the SpaCBA Pilus Fibers in the Probiotic Lactobacillus rhamnosus GG

(2012) Justus Reunanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Moonlighting is mainstream: Paradigm adjustment required

(2012) Shelley D. Copley   BIOESSAYS

Analysis of Genome Content Evolution in PVC Bacterial Super-Phylum: Assessment of Candidate Genes Associated with Cellular Organization and Lifestyle

(2012) Olga K. Kamneva et al.   Genome Biology and Evolution

Characterizing Kiwifruit Carbohydrate Utilization in vitro and its Consequences for Human Faecal Microbiota

(2012) Douglas I. Rosendale et al.   JOURNAL OF PROTEOME RESEARCH

The Microbiota of the Gut in Preschool Children With Normal and Excessive Body Weight

(2012) Caroline L.J. Karlsson et al.   Obesity

Molecular signatures for the PVC clade (Planctomycetes, Verrucomicrobia, Chlamydiae, and Lentisphaerae) of bacteria provide insights into their evolutionary relationships

(2012) Gupta   Frontiers in Microbiology

Genomic Analysis Indicates the Presence of an Asymmetric Bilayer Outer Membrane in Planctomycetes and Verrucomicrobia

(2012) Daan R. Speth et al.   Frontiers in Microbiology

Bacterial Virulence in the Moonlight: Multitasking Bacterial Moonlighting Proteins Are Virulence Determinants in Infectious Disease

(2011) Brian Henderson et al.   INFECTION AND IMMUNITY

Archaeosortases and Exosortases Are Widely Distributed Systems Linking Membrane Transit with Posttranslational Modification

(2011) D. H. Haft et al.   JOURNAL OF BACTERIOLOGY

Structure and Function of PilQ, a Secretin of the DNA Transporter from the Thermophilic BacteriumThermus thermophilusHB27

(2011) Janin Burkhardt et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Filter-aided sample preparation with dimethyl labeling to identify and quantify milk fat globule membrane proteins

(2011) Jing Lu et al.   Journal of Proteomics

Outer membrane proteome and its regulation networks in response to glucose concentration changes in Escherichia coli

(2011) Jun-Ning Yang et al.   Molecular BioSystems

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila

(2011) Muriel Derrien et al.   Frontiers in Microbiology

Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria

(2010) Chin Wen Png et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Mapping the Subcellular Proteome ofShewanella oneidensisMR-1 using Sarkosyl-Based Fractionation and LC−MS/MS Protein Identification

(2010) Roslyn N. Brown et al.   JOURNAL OF PROTEOME RESEARCH

Characterisation of proteins extracted from the surface of Salmonella Typhimurium grown under SPI-2-inducing conditions by LC-ESI/MS/MS sequencing

(2010) Aileen E. Sherry et al.   PROTEOMICS

The Compartmentalized Bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum Have Membrane Coat-Like Proteins

(2010) Rachel Santarella-Mellwig et al.   PLOS BIOLOGY

Biogenesis of Outer Membranes in Gram-Negative Bacteria

(2009) Hajime TOKUDA   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

(2009) Andrew P Jackson et al.   BMC GENOMICS

Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes

(2009) Kuo-Chang Lee et al.   BMC MICROBIOLOGY

Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology

(2009) Tsai-Tien Tseng et al.   BMC MICROBIOLOGY

Evaluation of procedures for outer membrane isolation from Campylobacter jejuni

(2009) R. I. Hobb et al.   MICROBIOLOGY-SGM

Physiological adaptation ofCorynebacterium glutamicumto benzoate as alternative carbon source - a membrane proteome-centric view

(2009) Ute Haußmann et al.   PROTEOMICS

Type IV pili: paradoxes in form and function

(2008) Lisa Craig et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Comparison of the Membrane Subproteomes during Growth of a NewPseudomonasStrain on Lysogeny Broth Medium, Glucose, and Phenol

(2008) Dimitrios G. Papasotiriou et al.   JOURNAL OF PROTEOME RESEARCH