Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean

The distribution of benthic biomass in hadal trenches: A modelling approach to investigate the effect of vertical and lateral organic matter transport to the seafloor

(2015) Matteo C. Ichino et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Effects of mass sedimentation events after the 2011 off the Pacific coast of Tohoku Earthquake on benthic prokaryotes and meiofauna inhabiting the upper bathyal sediments

(2015) Hidetaka Nomaki et al.   JOURNAL OF OCEANOGRAPHY

Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean

(2015) Alyson E. Santoro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hadal biosphere: Insight into the microbial ecosystem in the deepest ocean on Earth

(2015) Takuro Nunoura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of revised polymerase chain reaction primers for more inclusive quantification of ammonia-oxidizing archaea and bacteria

(2015) Kelley A. Meinhardt et al.   Environmental Microbiology Reports

Effect of the 2011 Tohoku Earthquake on deep-sea meiofaunal assemblages inhabiting the landward slope of the Japan Trench

(2014) Tomo Kitahashi et al.   MARINE GEOLOGY

Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres

(2014) Brandon K. Swan et al.   PLoS One

Characterization of a new marine nitrite oxidizing bacterium, Nitrospina watsonii sp. nov., a member of the newly proposed phylum “Nitrospinae”

(2014) Eva Spieck et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Helium anomalies suggest a fluid pathway from mantle to trench during the 2011 Tohoku-Oki earthquake

(2014) Yuji Sano et al.   Nature Communications

Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments

(2013) Takuro Nunoura et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Tsunami-generated turbidity current of the 2011 Tohoku-Oki earthquake

(2013) Kazuno Arai et al.   GEOLOGY

High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth

(2013) Ronnie N. Glud et al.   Nature Geoscience

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Hadal disturbance in the Japan Trench induced by the 2011 Tohoku–Oki Earthquake

(2013) Kazumasa Oguri et al.   Scientific Reports

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

ArchaealamoA gene diversity points to distinct biogeography of ammonia-oxidizingCrenarchaeotain the ocean

(2012) Eva Sintes et al.   ENVIRONMENTAL MICROBIOLOGY

Dynamic process of turbidity generation triggered by the 2011 Tohoku-Oki earthquake

(2012) Takuroh Noguchi et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade

(2012) Katharine T Marshall et al.   ISME Journal

Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing

(2012) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

Disturbance of deep-sea environments induced by the M9.0 Tohoku Earthquake

(2012) Shinsuke Kawagucci et al.   Scientific Reports

Differential photoinhibition of bacterial and archaeal ammonia oxidation

(2011) Stephanie N. Merbt et al.   FEMS MICROBIOLOGY LETTERS

Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic

(2011) Federico Baltar et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

(2011) Hamidreza Chitsaz et al.   NATURE BIOTECHNOLOGY

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight

(2010) J. Michael Beman et al.   ENVIRONMENTAL MICROBIOLOGY

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

(2010) Takuro Nunoura et al.   NUCLEIC ACIDS RESEARCH

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Paleo-perspectives on ocean acidification

(2010) Carles Pelejero et al.   TRENDS IN ECOLOGY & EVOLUTION

Development and application of a PCR-denaturing gradient gel electrophoresis tool to study the diversity of Nitrobacter-like nxrA sequences in soil

(2009) Sophie Wertz et al.   FEMS MICROBIOLOGY ECOLOGY

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Hadal trenches: the ecology of the deepest places on Earth

(2009) Alan J. Jamieson et al.   TRENDS IN ECOLOGY & EVOLUTION

Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary

(2008) Annika C. Mosier et al.   ENVIRONMENTAL MICROBIOLOGY

Surface Mooring Network in the Kuroshio Extension

(2008) M.F. Cronin et al.   IEEE Systems Journal

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

(2008) J Michael Beman et al.   ISME Journal