A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments

Diversity and Metabolic Potentials of Subsurface Crustal Microorganisms from the Western Flank of the Mid-Atlantic Ridge

(2016) Xinxu Zhang et al.   Frontiers in Microbiology

A comparison of DNA extraction methods for biodiversity studies of eukaryotes in marine sediments

(2015) K Lekang et al.   AQUATIC MICROBIAL ECOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types

(2015) Mark A. Lever et al.   Frontiers in Microbiology

Hot-Alkaline DNA Extraction Method for Deep-Subseafloor Archaeal Communities

(2014) Yuki Morono et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of DNA Extraction Method, 16S rRNA Targeted Hypervariable Regions, and Sample Origin on Microbial Diversity Detected by 454 Pyrosequencing in Marine Chemosynthetic Ecosystems

(2014) Perrine Cruaud et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Composition of hydrothermal fluids and mineralogy of associated chimney material on the East Scotia Ridge back-arc spreading centre

(2014) Rachael H. James et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

A procedure for separate recovery of extra- and intracellular DNA from a single marine sediment sample

(2014) Mashal Alawi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin

(2014) Adrien Vigneron et al.   PLoS One

Biomineralization mediated by anaerobic methane-consuming cell consortia

(2014) Ying Chen et al.   Scientific Reports

Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics

(2013) Chengwei Luo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

(2013) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Commercial DNA extraction kits impact observed microbial community composition in permafrost samples

(2013) Tatiana A. Vishnivetskaya et al.   FEMS MICROBIOLOGY ECOLOGY

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield

(2013) Mari Nyyssönen et al.   ISME Journal

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Bacterial and archaeal diversities in Yunnan and Tibetan hot springs, China

(2012) Zhao-Qi Song et al.   ENVIRONMENTAL MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

High-Throughput Sequencing of 16S rRNA Gene Amplicons: Effects of Extraction Procedure, Primer Length and Annealing Temperature

(2012) Martin J. Sergeant et al.   PLoS One

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

(2012) S. L. Jorgensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

A new DNA extraction method by controlled alkaline treatments from consolidated subsurface sediments

(2011) Mariko Kouduka et al.   FEMS MICROBIOLOGY LETTERS

DNA extractions from deep subseafloor sediments: Novel cryogenic-mill-based procedure and comparison to existing protocols

(2011) Karine Alain et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Clay mineral distribution in surface sediments of the South China Sea and its significance for in sediment sources and transport

(2010) Jianguo Liu et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Community Structure of Archaea from Deep-Sea Sediments of the South China Sea

(2010) Peng Wang et al.   MICROBIAL ECOLOGY

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Quantitative PCR methods for RNA and DNA in marine sediments: maximizing yield while overcoming inhibition

(2009) Karen G. Lloyd et al.   FEMS MICROBIOLOGY ECOLOGY

Discriminative detection and enumeration of microbial life in marine subsurface sediments

(2009) Yuki Morono et al.   ISME Journal

Microbial dissolution of clay minerals as a source of iron and silica in marine sediments

(2009) John S. Vorhies et al.   Nature Geoscience

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

(2009) F. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interaction between DNA and Cationic Surfactants: Effect of DNA Conformation and Surfactant Headgroup†

(2008) Rita S. Dias et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE