Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases

Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences

(2016) Katelyn Brandt et al.   Frontiers in Microbiology

Identification of Bacillus Probiotics Isolated from Soil Rhizosphere Using 16S rRNA, recA, rpoB Gene Sequencing and RAPD-PCR

(2016) Milad Mohkam et al.   Probiotics and Antimicrobial Proteins

Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing

(2016) Jennifer N. Patro et al.   mSphere

Development and utility of the FDA ‘GutProbe’ DNA microarray for identification, genotyping and metagenomic analysis of commercially available probiotics

(2015) J.N. Patro et al.   JOURNAL OF APPLIED MICROBIOLOGY

Soy Protein Compared with Milk Protein in a Western Diet Increases Gut Microbial Diversity and Reduces Serum Lipids in Golden Syrian Hamsters

(2015) Dustie N Butteiger et al.   JOURNAL OF NUTRITION

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Validating bifidobacterial species and subspecies identity in commercial probiotic products

(2015) Zachery T. Lewis et al.   PEDIATRIC RESEARCH

Determining the safety of microbial cultures for consumption by humans and animals

(2015) Michael W. Pariza et al.   REGULATORY TOXICOLOGY AND PHARMACOLOGY

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

(2015) Zhihong Sun et al.   Nature Communications

Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches

(2015) Konstantinos Papadimitriou et al.   Frontiers in Microbiology

Effects of genetic, processing, or product formulation changes on efficacy and safety of probiotics

(2014) Mary Ellen Sanders et al.   Annals of the New York Academy of Sciences

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

(2014) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Investigation of the Evolutionary Development of the Genus Bifidobacterium by Comparative Genomics

(2014) Gabriele Andrea Lugli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria

(2014) Catherine Davis   JOURNAL OF MICROBIOLOGICAL METHODS

Human Milk Glycomics and Gut Microbial Genomics in Infant Feces Show a Correlation between Human Milk Oligosaccharides and Gut Microbiota: A Proof-of-Concept Study

(2014) Maria Lorna A. De Leoz et al.   JOURNAL OF PROTEOME RESEARCH

The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic

(2014) Colin Hill et al.   Nature Reviews Gastroenterology & Hepatology

Bifidobacterium animalis subsp. lactis ATCC 27673 Is a Genomically Unique Strain within Its Conserved Subspecies

(2013) Joseph R. Loquasto et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Variation in Consumption of Human Milk Oligosaccharides by Infant Gut-Associated Strains of Bifidobacterium breve

(2013) Santiago Ruiz-Moyano et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Genomics of Bifidobacterium animalis subsp. lactis Reveals a Strict Monophyletic Bifidobacterial Taxon

(2013) C. Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation

(2012) Jeff R Broadbent et al.   BMC GENOMICS

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

CRISPR: New Horizons in Phage Resistance and Strain Identification

(2012) Rodolphe Barrangou et al.   Annual Review of Food Science and Technology

Recent advances in quantitative PCR (qPCR) applications in food microbiology

(2011) Florence Postollec et al.   FOOD MICROBIOLOGY

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

(2011) O.-S. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Rapid and Accurate Bacterial Identification in Probiotics and Yoghurts by MALDI-TOF Mass Spectrometry

(2011) Emmanouil Angelakis et al.   JOURNAL OF FOOD SCIENCE

Broad Conservation of Milk Utilization Genes in Bifidobacterium longum subsp. infantis as Revealed by Comparative Genomic Hybridization

(2010) R. G. LoCascio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strain-Specific Genotyping of Bifidobacterium animalis subsp. lactis by Using Single-Nucleotide Polymorphisms, Insertions, and Deletions

(2009) E. P. Briczinski et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of live and dead probiotic bacteria in lyophilised product by real-time PCR and by flow cytometry

(2009) Mateja Kramer et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Comparison of the Complete Genome Sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04

(2009) R. Barrangou et al.   JOURNAL OF BACTERIOLOGY

Probiotic Effects on Cold and Influenza-Like Symptom Incidence and Duration in Children

(2009) G. J. Leyer et al.   PEDIATRICS