From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 7, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2016-06-17
DOI
10.3389/fmicb.2016.00907
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Solving Puzzles With Missing Pieces: The Power of Systems Biology
- (2016) James T. Yurkovich et al. PROCEEDINGS OF THE IEEE
- Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
- (2015) Savannah E. Sanchez et al. Jove-Journal of Visualized Experiments
- RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
- (2015) Thomas Brettin et al. Scientific Reports
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
- (2014) Joanne K Liu et al. BMC Systems Biology
- An integrative, multi-scale, genome-wide model reveals the phenotypic landscape of Escherichia coli
- (2014) J. Carrera et al. Molecular Systems Biology
- Long-term phenotypic evolution of bacteria
- (2014) Germán Plata et al. NATURE
- Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models
- (2014) Matthew N. Benedict et al. PLoS Computational Biology
- COBRApy: COnstraints-Based Reconstruction and Analysis for Python
- (2013) Ali Ebrahim et al. BMC Systems Biology
- Software platforms to facilitate reconstructing genome-scale metabolic networks
- (2013) Joshua J. Hamilton et al. ENVIRONMENTAL MICROBIOLOGY
- Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
- (2013) E. J. O{middle dot}Brien et al. Molecular Systems Biology
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
- (2013) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- PATRIC, the bacterial bioinformatics database and analysis resource
- (2013) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- Software applications for flux balance analysis
- (2012) M. Lakshmanan et al. BRIEFINGS IN BIOINFORMATICS
- Frontiers in metabolic reconstruction and modeling of plant genomes
- (2012) S. M. D. Seaver et al. JOURNAL OF EXPERIMENTAL BOTANY
- MIRAGE: a functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks
- (2012) Edward Vitkin et al. GENOME BIOLOGY
- An application programming interface for CellNetAnalyzer
- (2011) Steffen Klamt et al. BIOSYSTEMS
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis
- (2011) Matthew A. Oberhardt et al. PLoS Computational Biology
- Computationally efficient flux variability analysis
- (2010) Steinn Gudmundsson et al. BMC BIOINFORMATICS
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Probabilistic integrative modeling of genome-scale metabolic and regulatory networks inEscherichia coliandMycobacterium tuberculosis
- (2010) Sriram Chandrasekaran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Flux balance analysis of biological systems: applications and challenges
- (2009) K. Raman et al. BRIEFINGS IN BIOINFORMATICS
- GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions
- (2009) Vinay Satish Kumar et al. PLoS Computational Biology
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- The Systems Biology Research Tool: evolvable open-source software
- (2008) Jeremiah Wright et al. BMC Systems Biology
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started