Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting

Estimating the Global Burden of Endemic Canine Rabies

(2015) Katie Hampson et al.   PLoS Neglected Tropical Diseases

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data

(2014) N. Mollentze et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Assembling evidence for identifying reservoirs of infection

(2014) Mafalda Viana et al.   TRENDS IN ECOLOGY & EVOLUTION

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

(2014) Thibaut Jombart et al.   PLoS Computational Biology

A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics

(2013) Anne Cori et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Probabilistic measures of persistence and extinction in measles (meta)populations

(2013) Christian E. Gunning et al.   ECOLOGY LETTERS

Structuring targeted surveillance for monitoring disease emergence by mapping observational data onto ecological process

(2013) L. Gerardo-Giorda et al.   Journal of the Royal Society Interface

Dog rabies in southern Africa: regional surveillance and phylogeographical analyses are an important component of control and elimination strategies

(2013) N. Mollentze et al.   VIRUS GENES

Comparing methods for estimating R0 from the size distribution of subcritical transmission chains

(2013) S. Blumberg et al.   Epidemics

New introduction and spread of rabies among dog population in Bangui

(2012) E. Nakouné et al.   ACTA TROPICA

Evidence-based control of canine rabies: a critical review of population density reduction

(2012) Michelle K. Morters et al.   JOURNAL OF ANIMAL ECOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrating the landscape epidemiology and genetics of RNA viruses: rabies in domestic dogs as a model

(2012) K. BRUNKER et al.   PARASITOLOGY

A Bayesian Inference Framework to Reconstruct Transmission Trees Using Epidemiological and Genetic Data

(2012) Marco J. Morelli et al.   PLoS Computational Biology

The Blueprint for Rabies Prevention and Control: A Novel Operational Toolkit for Rabies Elimination

(2012) Tiziana Lembo et al.   PLoS Neglected Tropical Diseases

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

(2011) F. Bielejec et al.   BIOINFORMATICS

Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data

(2011) R. J. F. Ypma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The implications of metapopulation dynamics on the design of vaccination campaigns

(2011) Hawthorne L. Beyer et al.   VACCINE

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series

(2011) David A. Rasmussen et al.   PLoS Computational Biology

Particle Markov chain Monte Carlo methods

(2010) Christophe Andrieu et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

(2010) P. Lemey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metapopulation dynamics of rabies and the efficacy of vaccination

(2010) H. L. Beyer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus

(2010) Chiraz Talbi et al.   PLoS Pathogens

Evolutionary history and dynamics of dog rabies virus in western and central Africa

(2009) C. Talbi et al.   JOURNAL OF GENERAL VIROLOGY

Transmission dynamics and economics of rabies control in dogs and humans in an African city

(2009) J. Zinsstag et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The fight against rabies in Africa: From recognition to action

(2009) Betty Dodet   VACCINE

Transmission Dynamics and Prospects for the Elimination of Canine Rabies

(2009) Katie Hampson et al.   PLOS BIOLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

A Reliable Diagnosis of Human Rabies Based on Analysis of Skin Biopsy Specimens

(2008) Laurent Dacheux et al.   CLINICAL INFECTIOUS DISEASES

The origin and phylogeography of dog rabies virus

(2008) H. Bourhy et al.   JOURNAL OF GENERAL VIROLOGY

The effect of superspreading on epidemic outbreak size distributions

(2008) T. Garske et al.   JOURNAL OF THEORETICAL BIOLOGY

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic Diversity and Evolution of the Lyssaviruses

(2008) Olivier Delmas et al.   PLoS One

Rabies Diagnosis for Developing Countries

(2008) Salome Dürr et al.   PLoS Neglected Tropical Diseases