Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes

Compartmentalized gene regulatory network of the pathogenic fungusFusarium graminearum

(2016) Li Guo et al.   NEW PHYTOLOGIST

The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis

(2016) Marie Tollot et al.   PLoS Pathogens

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

The APSES transcription factor LmStuA is required for sporulation, pathogenic development and effector gene expression inLeptosphaeria maculans

(2015) Jessica L. Soyer et al.   MOLECULAR PLANT PATHOLOGY

The WOPR Domain Protein OsaA Orchestrates Development in Aspergillus nidulans

(2015) Fahad Alkahyyat et al.   PLoS One

Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

(2015) Klaas Schotanus et al.   Epigenetics & Chromatin

Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities

(2015) Kamesh Narasimhan et al.   eLife

The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infection

(2015) Fleur Gawehns et al.   Frontiers in Plant Science

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

(2014) S. Priebe et al.   BIOINFORMATICS

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

(2014) Jonathan Grandaubert et al.   BMC GENOMICS

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

Crystal structure of the WOPR-DNA complex and implications for Wor1 function in white-opaque switching of Candida albicans

(2014) Shicheng Zhang et al.   CELL RESEARCH

The global regulator FfSge1 is required for expression of secondary metabolite gene clusters but not for pathogenicity inFusarium fujikuroi

(2014) Caroline B. Michielse et al.   ENVIRONMENTAL MICROBIOLOGY

Functional analysis of the conserved transcriptional regulator CfWor1 inCladosporium fulvumreveals diverse roles in the virulence of plant pathogenic fungi

(2014) Bilal Ökmen et al.   MOLECULAR MICROBIOLOGY

Virulence of the maize smutUstilago maydisis shaped by organ-specific effectors

(2014) Lena Schilling et al.   MOLECULAR PLANT PATHOLOGY

Fusarium verticillioides SGE1 Is Required for Full Virulence and Regulates Expression of Protein Effector and Secondary Metabolite Biosynthetic Genes

(2014) Daren W. Brown et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Host-induced post-transcriptional hairpin RNA-mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana

(2014) Siddhesh B. Ghag et al.   PLANT BIOTECHNOLOGY JOURNAL

Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi

(2014) M. B. Lohse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans

(2014) Jessica L. Soyer et al.   PLoS Genetics

Two Histone Deacetylases, FfHda1 and FfHda2, Are Important for Fusarium fujikuroi Secondary Metabolism and Virulence

(2013) L. Studt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum

(2013) Sarah M Schmidt et al.   BMC GENOMICS

Shared and distinct functions of two Gti1/Pac2 family proteins in growth, morphogenesis and pathogenicity ofMagnaporthe oryzae

(2013) Yue Chen et al.   ENVIRONMENTAL MICROBIOLOGY

EBR1genomic expansion and its role in virulence ofFusariumspecies

(2013) Wilfried Jonkers et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular characterization and functional analyses ofZtWor1, a transcriptional regulator of the fungal wheat pathogenZymoseptoria tritici

(2013) Amir Mirzadi Gohari et al.   MOLECULAR PLANT PATHOLOGY

The Fusarium oxysporum Effector Six6 Contributes to Virulence and Suppresses I-2-Mediated Cell Death

(2013) F. Gawehns et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Evaluation of methods for modeling transcription factor sequence specificity

(2013) Matthew T Weirauch et al.   NATURE BIOTECHNOLOGY

The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters

(2013) Lanelle R. Connolly et al.   PLoS Genetics

Verticillium dahliae Sge1 Differentially Regulates Expression of Candidate Effector Genes

(2012) Parthasarathy Santhanam et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

The Wor1-like Protein Fgp1 Regulates Pathogenicity, Toxin Synthesis and Reproduction in the Phytopathogenic Fungus Fusarium graminearum

(2012) Wilfried Jonkers et al.   PLoS Pathogens

The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens

(2012) Daniel Croll et al.   PLoS Pathogens

A Conserved Transcriptional Regulator Governs Fungal Morphology in Widely Diverged Species

(2011) Christopher W. Cain et al.   GENETICS

TheBotrytis cinereaReg1 Protein, a Putative Transcriptional Regulator, Is Required for Pathogenicity, Conidiogenesis, and the Production of Secondary Metabolites

(2011) Caroline B. Michielse et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays

(2011) Kathy N. Lam et al.   NUCLEIC ACIDS RESEARCH

Multiple Translocation of the AVR-Pita Effector Gene among Chromosomes of the Rice Blast Fungus Magnaporthe oryzae and Related Species

(2011) Izumi Chuma et al.   PLoS Pathogens

A Phenome-Based Functional Analysis of Transcription Factors in the Cereal Head Blight Fungus, Fusarium graminearum

(2011) Hokyoung Son et al.   PLoS Pathogens

The Transcription Factor StuA Regulates Central Carbon Metabolism, Mycotoxin Production, and Effector Gene Expression in the Wheat Pathogen Stagonospora nodorum

(2010) Simon V. S. IpCho et al.   EUKARYOTIC CELL

TheUstilago maydisForkhead Transcription Factor Fox1 Is Involved in the Regulation of Genes Required for the Attenuation of Plant Defenses During Pathogenic Development

(2010) Alexander Zahiri et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

New Virulence Groups inFusarium oxysporumf. sp.phaseoli: The Expression of the Gene Coding for the Transcription Factor ftf1 Correlates with Virulence

(2010) José J. de Vega-Bartol et al.   PHYTOPATHOLOGY

Distinct class of DNA-binding domains is exemplified by a master regulator of phenotypic switching in Candida albicans

(2010) M. B. Lohse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Transcription Factor Rbf1 Is the Master Regulator for b-Mating Type Controlled Pathogenic Development in Ustilago maydis

(2010) Kai Heimel et al.   PLoS Pathogens

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Horizontal Chromosome Transfer, a Mechanism for the Evolution and Differentiation of a Plant-Pathogenic Fungus

(2009) Yasunori Akagi et al.   EUKARYOTIC CELL

Generic binding sites, generic DNA-binding domains: where does specific promoter recognition come from?

(2009) Adrien B. Georges et al.   FASEB JOURNAL

TheUstilago maydis bmating type locus controls hyphal proliferation and expression of secreted virulence factorsin planta

(2009) Ramon Wahl et al.   MOLECULAR MICROBIOLOGY

The effector protein Avr2 of the xylem-colonizing fungusFusarium oxysporumactivates the tomato resistance protein I-2 intracellularly

(2009) Petra M. Houterman et al.   PLANT JOURNAL

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

(2009) Jeffrey J. Coleman et al.   PLoS Genetics

The Nuclear Protein Sge1 of Fusarium oxysporum Is Required for Parasitic Growth

(2009) Caroline B. Michielse et al.   PLoS Pathogens

Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis

(2009) Caroline B Michielse et al.   GENOME BIOLOGY

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

(2008) Michael F. Berger et al.   CELL

The presence of a virulence locus discriminates Fusarium oxysporum isolates causing tomato wilt from other isolates

(2008) H. Charlotte Van Der Does et al.   ENVIRONMENTAL MICROBIOLOGY

Expression of effector gene SIX1 of Fusarium oxysporum requires living plant cells

(2008) H. Charlotte van der Does et al.   FUNGAL GENETICS AND BIOLOGY

Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments

(2008) Anthony A. Philippakis et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

TheUstilago maydisCys2His2-type zinc finger transcription factor Mzr1 regulates fungal gene expression during the biotrophic growth stage

(2008) Yan Zheng et al.   MOLECULAR MICROBIOLOGY

Conserved factors Ryp2 and Ryp3 control cell morphology and infectious spore formation in the fungal pathogen Histoplasma capsulatum

(2008) R. H. Webster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Suppression of Plant Resistance Gene-Based Immunity by a Fungal Effector

(2008) Petra M. Houterman et al.   PLoS Pathogens