Genetic Dissection of Dual Roles for the Transcription Factor six7 in Photoreceptor Development and Patterning in Zebrafish

Single-Photon Sensitivity of Lamprey Rods with Cone-like Outer Segments

(2015) Ala Morshedian et al.   CURRENT BIOLOGY

Photoreceptor cell fate specification in vertebrates

(2015) Joseph A. Brzezinski et al.   DEVELOPMENT

Brachyury and SMAD signalling collaboratively orchestrate distinct mesoderm and endoderm gene regulatory networks in differentiating human embryonic stem cells

(2015) T. Faial et al.   DEVELOPMENT

Visual system evolution and the nature of the ancestral snake

(2015) B. F. Simões et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evolutionary transformation of rod photoreceptors in the all-cone retina of a diurnal garter snake

(2015) Ryan K. Schott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gain ofcis-regulatory activities underlies novel domains ofwinglessgene expression inDrosophila

(2015) Shigeyuki Koshikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish

(2015) Yohey Ogawa et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Retinoic Acid Signaling Regulates Differential Expression of the Tandemly-Duplicated Long Wavelength-Sensitive Cone Opsin Genes in Zebrafish

(2015) Diana M. Mitchell et al.   PLoS Genetics

A Cambrian origin for vertebrate rods

(2015) Sabrina Asteriti et al.   eLife

Independent Genomic Control of Neuronal Number across Retinal Cell Types

(2014) Patrick W. Keeley et al.   DEVELOPMENTAL CELL

A Gene Regulatory Network Controls the Binary Fate Decision of Rod and Bipolar Cells in the Vertebrate Retina

(2014) Sui Wang et al.   DEVELOPMENTAL CELL

Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification

(2014) Jennifer M. Enright et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution

(2014) Cosmas D Arnold et al.   NATURE GENETICS

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Patterning the Cone Mosaic Array in Zebrafish Retina Requires Specification of Ultraviolet-Sensitive Cones

(2014) Pamela A. Raymond et al.   PLoS One

Ancestral duplications and highly dynamic opsin gene evolution in percomorph fishes

(2014) Fabio Cortesi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications

(2013) David Lagman et al.   BMC EVOLUTIONARY BIOLOGY

Rod Photoreceptors Protect from Cone Degeneration-Induced Retinal Remodeling and Restore Visual Responses in Zebrafish

(2013) C. J. Saade et al.   JOURNAL OF NEUROSCIENCE

Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors

(2013) S. C. Suzuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Losses of functional opsin genes, short-wavelength cone photopigments, and color vision—A significant trend in the evolution of mammalian vision

(2013) GERALD H. JACOBS   VISUAL NEUROSCIENCE

Six3 cooperates with Hedgehog signaling to specify ventral telencephalon by promoting early expression of Foxg1a and repressing Wnt signaling

(2012) D. Carlin et al.   DEVELOPMENT

Dual transcriptional activities of SIX proteins define their roles in normal and ectopic eye development

(2012) A. M. Anderson et al.   DEVELOPMENT

Crb Apical Polarity Proteins Maintain Zebrafish Retinal Cone Mosaics via Intercellular Binding of Their Extracellular Domains

(2012) Jian Zou et al.   DEVELOPMENTAL CELL

Molecular ecology and adaptation of visual photopigments in craniates

(2012) WAYNE I. L. DAVIES et al.   MOLECULAR ECOLOGY

β-catenin/Wnt signaling controls progenitor fate in the developing and regenerating zebrafish retina

(2012) Jason R Meyers et al.   Neural Development

Complex effects of nucleotide variants in a mammalian cis-regulatory element

(2012) J. C. Kwasnieski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eye shape and the nocturnal bottleneck of mammals

(2012) M. I. Hall et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

(2011) Aaron W. Aday et al.   DEVELOPMENTAL BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Nocturnal Bottleneck and the Evolution of Mammalian Vision

(2010) Christopher P. Heesy et al.   BRAIN BEHAVIOR AND EVOLUTION

The inhibitor of phagocytosis, O-phospho-l-serine, suppresses Müller glia proliferation and cone cell regeneration in the light-damaged zebrafish retina

(2010) Travis J. Bailey et al.   EXPERIMENTAL EYE RESEARCH

Ontogeny of cone photoreceptor mosaics in zebrafish

(2010) W. Ted Allison et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Zebrafish Class 1 Phosphatidylinositol Transfer Proteins: PITPβ and Double Cone Cell Outer Segment Integrity in Retina

(2010) Kristina E. Ile et al.   TRAFFIC

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Expanded progenitor populations, vitreo-retinal abnormalities, and Müller glial reactivity in the zebrafish leprechaun/patched2 retina

(2009) Jonathan Bibliowicz et al.   BMC DEVELOPMENTAL BIOLOGY

Gene duplication and differential gene expression play an important role in the diversification of visual pigments in fish

(2009) C. M. Hofmann et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

The evolution of early vertebrate photoreceptors

(2009) S. P. Collin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Tbx2b is required for ultraviolet photoreceptor cell specification during zebrafish retinal development

(2009) Karen Alvarez-Delfin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution of color vision in nocturnal mammals

(2009) H. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Developmental sources of conservation and variation in the evolution of the primate eye

(2009) M. A. Dyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

The sine oculis homeobox (SIX) family of transcription factors as regulators of development and disease

(2008) J. P. Kumar   CELLULAR AND MOLECULAR LIFE SCIENCES

The developmental sequence of gene expression within the rod photoreceptor lineage in embryonic zebrafish

(2008) Steve M. Nelson et al.   DEVELOPMENTAL DYNAMICS

Genetic dissection reveals two separate pathways for rod and cone regeneration in the teleost retina

(2008) Ann C. Morris et al.   Developmental Neurobiology

Molecular Basis of Spectral Tuning in the Red- and Green-Sensitive (M/LWS) Pigments in Vertebrates

(2008) S. Yokoyama et al.   GENETICS

NeuroD regulates proliferation of photoreceptor progenitors in the retina of the zebrafish

(2008) M.J. Ochocinska et al.   MECHANISMS OF DEVELOPMENT

Evolution of vertebrate visual pigments

(2008) James K. Bowmaker   VISION RESEARCH

Have we achieved a unified model of photoreceptor cell fate specification in vertebrates?

(2007) Ruben Adler et al.   BRAIN RESEARCH