Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters
Authors
Keywords
DNA transcription, Sequence motif analysis, Nucleosomes, Chromatin, Sequence alignment, Transcription factors, Gene expression, Transcriptional control
Journal
PLoS Genetics
Volume 12, Issue 8, Pages e1006224
Publisher
Public Library of Science (PLoS)
Online
2016-08-04
DOI
10.1371/journal.pgen.1006224
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution
- (2015) Andreas Mayer et al. CELL
- Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin
- (2015) Benjamin S. Scruggs et al. MOLECULAR CELL
- Human Promoters Are Intrinsically Directional
- (2015) Sascha H.C. Duttke et al. MOLECULAR CELL
- ARGONAUTE2 cooperates with SWI/SNF complex to determine nucleosome occupancy at human Transcription Start Sites
- (2015) Claudia Carissimi et al. NUCLEIC ACIDS RESEARCH
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- deepTools: a flexible platform for exploring deep-sequencing data
- (2014) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality
- (2013) Evgenia Ntini et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- RefSeq: an update on mammalian reference sequences
- (2013) Kim D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription
- (2012) Daniel A. Gilchrist et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Set3 HDAC Mediates Effects of Overlapping Noncoding Transcription on Gene Induction Kinetics
- (2012) TaeSoo Kim et al. CELL
- Analysis of Chromatin Dynamics during Glucocorticoid Receptor Activation
- (2012) C. J. Burd et al. MOLECULAR AND CELLULAR BIOLOGY
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
- (2011) R. A. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Bidirectional promoters generate pervasive transcription in yeast
- (2009) Zhenyu Xu et al. NATURE
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila
- (2009) S. Nechaev et al. SCIENCE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- High-Resolution Mapping and Characterization of Open Chromatin across the Genome
- (2008) Alan P. Boyle et al. CELL
- Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
- (2008) R. Jothi et al. NUCLEIC ACIDS RESEARCH
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
- (2008) Pascal Preker et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now