Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation

MiXCR: software for comprehensive adaptive immunity profiling

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StochHMM: a flexible hidden Markov model tool and C++ library

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Immunoglobulin Gene Insertions and Deletions in the Affinity Maturation of HIV-1 Broadly Reactive Neutralizing Antibodies

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Reconstructing a B-Cell Clonal Lineage. II. Mutation, Selection, and Affinity Maturation

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Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations

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The Restricted DH Gene Reading Frame Usage in the Expressed Human Antibody Repertoire Is Selected Based upon its Amino Acid Content

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Genetic measurement of memory B-cell recall using antibody repertoire sequencing

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Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains

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The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies

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Shaping of Human Germline IgH Repertoires Revealed by Deep Sequencing

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Simulating Trees with a Fixed Number of Extant Species

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High-Throughput Sequencing of the Zebrafish Antibody Repertoire

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Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

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