StochHMM: a flexible hidden Markov model tool and C++ library

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination

(2013) P. A. Ginno et al.   GENOME RESEARCH

The human placenta methylome

(2013) D. I. Schroeder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

R-Loop Formation Is a Distinctive Characteristic of Unmethylated Human CpG Island Promoters

(2012) Paul A. Ginno et al.   MOLECULAR CELL

Large-scale methylation domains mark a functional subset of neuronally expressed genes

(2011) D. I. Schroeder et al.   GENOME RESEARCH

HMMConverter 1.0: a toolbox for hidden Markov models

(2009) Tin Yin Lam et al.   NUCLEIC ACIDS RESEARCH

MAMOT: hidden Markov modeling tool

(2008) Frédéric Schütz et al.   BIOINFORMATICS