Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota

Signaling in Host-Associated Microbial Communities

(2016) Michael A. Fischbach et al.   CELL

Investigating Bacterial-Animal Symbioses with Light Sheet Microscopy

(2016) Michael J. Taormina et al.   BIOLOGICAL BULLETIN

Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis

(2015) Jessica M. Yano et al.   CELL

From Hype to Hope: The Gut Microbiota in Enteric Infectious Disease

(2015) Peter T. McKenney et al.   CELL

Regulators of Gut Motility Revealed by a Gnotobiotic Model of Diet-Microbiome Interactions Related to Travel

(2015) Neelendu Dey et al.   CELL

Individual Members of the Microbiota Disproportionately Modulate Host Innate Immune Responses

(2015) Annah S. Rolig et al.   Cell Host & Microbe

Hirschsprungʼs associated enterocolitis

(2015) Ankush Gosain et al.   CURRENT OPINION IN PEDIATRICS

A combined light sheet fluorescence and differential interference contrast microscope for live imaging of multicellular specimens

(2015) R.P. BAKER et al.   JOURNAL OF MICROSCOPY

Feeding the brain and nurturing the mind: Linking nutrition and the gut microbiota to brain development

(2015) Manu S. Goyal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Strongly Deterministic Population Dynamics in Closed Microbial Communities

(2015) Zak Frentz et al.   Physical Review X

Characterization of Bacterial and Fungal Microbiome in Children with Hirschsprung Disease with and without a History of Enterocolitis: A Multicenter Study

(2015) Philip K. Frykman et al.   PLoS One

Crosstalk between Muscularis Macrophages and Enteric Neurons Regulates Gastrointestinal Motility

(2014) Paul Andrew Muller et al.   CELL

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

(2014) Laura M. Cox et al.   CELL

Biotic interactions and temporal dynamics of the human gastrointestinal microbiota

(2014) Pål Trosvik et al.   ISME Journal

Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression

(2014) Charles K. Fisher et al.   PLoS One

Functional and phylogenetic assembly of microbial communities in the human microbiome

(2014) Afrah Shafquat et al.   TRENDS IN MICROBIOLOGY

Spatial and Temporal Features of the Growth of a Bacterial Species Colonizing the Zebrafish Gut

(2014) Matthew Jemielita et al.   mBio

Host lifestyle affects human microbiota on daily timescales

(2014) Lawrence A David et al.   GENOME BIOLOGY

Tit-for-Tat: Type VI Secretion System Counterattack during Bacterial Cell-Cell Interactions

(2013) Marek Basler et al.   CELL

Innate and Adaptive Immunity Interact to Quench Microbiome Flagellar Motility in the Gut

(2013) Tyler C. Cullender et al.   Cell Host & Microbe

Complex Interactions Among Diet, Gastrointestinal Transit, and Gut Microbiota in Humanized Mice

(2013) Purna C. Kashyap et al.   GASTROENTEROLOGY

Spatial Structure Facilitates Cooperation in a Social Dilemma: Empirical Evidence from a Bacterial Community

(2013) Felix J. H. Hol et al.   PLoS One

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

(2013) R. Levy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

(2013) Richard R. Stein et al.   PLoS Computational Biology

Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish

(2012) Ivana Semova et al.   Cell Host & Microbe

Intestinal colonization resistance

(2012) Trevor D. Lawley et al.   IMMUNOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Generic Indicators for Loss of Resilience Before a Tipping Point Leading to Population Collapse

(2012) L. Dai et al.   SCIENCE

Type 6 Secretion Dynamics Within and Between Bacterial Cells

(2012) M. Basler et al.   SCIENCE

Host-Gut Microbiota Metabolic Interactions

(2012) J. K. Nicholson et al.   SCIENCE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Fluid dynamics and noise in bacterial cell-cell and cell-surface scattering

(2011) K. Drescher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early Warnings of Regime Shifts: A Whole-Ecosystem Experiment

(2011) S. R. Carpenter et al.   SCIENCE

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

TagA is a secreted protease of Vibrio cholerae that specifically cleaves mucin glycoproteins

(2010) R. L. Szabady et al.   MICROBIOLOGY-SGM

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochastic models of population extinction

(2010) Otso Ovaskainen et al.   TRENDS IN ECOLOGY & EVOLUTION

Environments that Induce Synthetic Microbial Ecosystems

(2010) Niels Klitgord et al.   PLoS Computational Biology

Snowdrift game dynamics and facultative cheating in yeast

(2009) Jeff Gore et al.   NATURE

Helicobacter pylori moves through mucus by reducing mucin viscoelasticity

(2009) J. P. Celli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ret isoform function and marker gene expression in the enteric nervous system is conserved across diverse vertebrate species

(2008) Tiffany A. Heanue et al.   MECHANISMS OF DEVELOPMENT

Extinction risk depends strongly on factors contributing to stochasticity

(2008) Brett A. Melbourne et al.   NATURE

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defined spatial structure stabilizes a synthetic multispecies bacterial community

(2008) H. J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE