Genome maintenance and bioenergetics of the long-lived hypoxia-tolerant and cancer-resistant blind mole rat, Spalax: a cross-species analysis of brain transcriptome

Adaptive patterns in the p53 protein sequence of the hypoxia- and cancer-tolerant blind mole rat Spalax

(2016) Vered Domankevich et al.   BMC EVOLUTIONARY BIOLOGY

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

(2016) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Initial Case Reports of Cancer in Naked Mole-rats (Heterocephalus glaber)

(2016) M. A. Delaney et al.   VETERINARY PATHOLOGY

The Werner syndrome protein: linking the replication checkpoint response to genome stability

(2016) Pietro Pichierri et al.   Aging-US

DNA Replication Stress as a Hallmark of Cancer

(2015) Morgane Macheret et al.   Annual Review of Pathology-Mechanisms of Disease

RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power

(2015) Chee Lee et al.   BIOINFORMATICS

Evidence That the DNA Mismatch Repair System Removes 1-Nucleotide Okazaki Fragment Flaps

(2015) Lyudmila Y. Kadyrova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

NTHL1 mutations predispose to adenomatous polyposis

(2015)   Nature Reviews Clinical Oncology

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

MCM8-9 complex promotes resection of double-strand break ends by MRE11-RAD50-NBS1 complex

(2015) Kyung Yong Lee et al.   Nature Communications

Role of RNase H1 in DNA repair: removal of single ribonucleotide misincorporated into DNA in collaboration with RNase H2

(2015) Elias Tannous et al.   Scientific Reports

Replication Stress in Mammalian Cells and Its Consequences for Mitosis

(2015) Camille Gelot et al.   Genes

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons

(2014) Ying Zhu et al.   BMC GENOMICS

ROS Function in Redox Signaling and Oxidative Stress

(2014) Michael Schieber et al.   CURRENT BIOLOGY

DNA replication stress: Causes, resolution and disease

(2014) Abdelghani Mazouzi et al.   EXPERIMENTAL CELL RESEARCH

No oxygen? No problem! Intrinsic brain tolerance to hypoxia in vertebrates

(2014) J. Larson et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Hypoxia Provokes Base Excision Repair Changes and a Repair-Deficient, Mutator Phenotype in Colorectal Cancer Cells

(2014) Norman Chan et al.   MOLECULAR CANCER RESEARCH

Hypoxic Stress Facilitates Acute Activation and Chronic Downregulation of Fanconi Anemia Proteins

(2014) Susan E. Scanlon et al.   MOLECULAR CANCER RESEARCH

DNA-Directed Polymerase Subunits Play a Vital Role in Human Telomeric Overhang Processing

(2014) Raffaella Diotti et al.   MOLECULAR CANCER RESEARCH

Abundance of the Fanconi anaemia core complex is regulated by the RuvBL1 and RuvBL2 AAA+ ATPases

(2014) Eeson Rajendra et al.   NUCLEIC ACIDS RESEARCH

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

(2014) Erik L.L. Sonnhammer et al.   NUCLEIC ACIDS RESEARCH

Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax

(2014) Xiaodong Fang et al.   Nature Communications

RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells

(2014) Rajika Arora et al.   Nature Communications

Adaptations to a Subterranean Environment and Longevity Revealed by the Analysis of Mole Rat Genomes

(2014) Xiaodong Fang et al.   Cell Reports

IVT-seq reveals extreme bias in RNA sequencing

(2014) Nicholas F Lahens et al.   GENOME BIOLOGY

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Pronounced cancer resistance in a subterranean rodent, the blind mole-rat, Spalax: in vivo and in vitro evidence

(2013) Irena Manov et al.   BMC BIOLOGY

Recruitment of DNA polymerase eta by FANCD2 in the early response to DNA damage

(2013) Dechen Fu et al.   CELL CYCLE

Hypoxia-inducible factor prolyl hydroxylases as targets for neuroprotection by “antioxidant” metal chelators: From ferroptosis to stroke

(2013) Rachel E. Speer et al.   FREE RADICAL BIOLOGY AND MEDICINE

DNA mismatch repair gene MSH6 implicated in determining age at natural menopause

(2013) John R.B. Perry et al.   HUMAN MOLECULAR GENETICS

The role of mitochondria in aging

(2013) Ana Bratic et al.   JOURNAL OF CLINICAL INVESTIGATION

Transcription Pattern of p53-Targeted DNA Repair Genes in the Hypoxia-Tolerant Subterranean Mole Rat Spalax

(2013) Imad Shams et al.   JOURNAL OF MOLECULAR BIOLOGY

The MCM8-MCM9 Complex Promotes RAD51 Recruitment at DNA Damage Sites To Facilitate Homologous Recombination

(2013) J. Park et al.   MOLECULAR AND CELLULAR BIOLOGY

Causes and consequences of replication stress

(2013) Michelle K. Zeman et al.   NATURE CELL BIOLOGY

Base Excision Repair

(2013) H. E. Krokan et al.   Cold Spring Harbor Perspectives in Biology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Transcriptome analysis of the spalax hypoxia survival response includes suppression of apoptosis and tight control of angiogenesis

(2012) Assaf Malik et al.   BMC GENOMICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Regulation of DNA cross-link repair by the Fanconi anemia/BRCA pathway

(2012) H. Kim et al.   GENES & DEVELOPMENT

Human Ageing Genomic Resources: Integrated databases and tools for the biology and genetics of ageing

(2012) Robi Tacutu et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Redox control of cell proliferation

(2012) Joyce Chiu et al.   TRENDS IN CELL BIOLOGY

The p53 network: cellular and systemic DNA damage responses in aging and cancer

(2012) H. Christian Reinhardt et al.   TRENDS IN GENETICS

The Rate of Increase of Short Telomeres Predicts Longevity in Mammals

(2012) Elsa Vera et al.   Cell Reports

Direct repair of 3,N4-ethenocytosine by the human ALKBH2 dioxygenase is blocked by the AAG/MPG glycosylase

(2011) Dragony Fu et al.   DNA REPAIR

Roles of DNA Repair Proteins in Telomere Maintenance

(2010) Masaru UENO   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Effects of Acute versus Chronic Hypoxia on DNA Damage Responses and Genomic Instability

(2010) I. M. Pires et al.   CANCER RESEARCH

Mutational and expressional analysis of RFC3, a clamp loader in DNA replication, in gastric and colorectal cancers

(2010) Yoo Ri Kim et al.   HUMAN PATHOLOGY

Does a helicase activity help mismatch repair in eukaryotes?

(2010) Limin Song et al.   IUBMB LIFE

Mouse Rad1 deletion enhances susceptibility for skin tumor development

(2010) Lu Han et al.   Molecular Cancer

The DNA Damage Response: Making It Safe to Play with Knives

(2010) Alberto Ciccia et al.   MOLECULAR CELL

The Tumor Microenvironment and DNA Repair

(2010) Thomas J. Klein et al.   SEMINARS IN RADIATION ONCOLOGY

Modeling non-uniformity in short-read rates in RNA-Seq data

(2010) Jun Li et al.   GENOME BIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Inactivation of Murine Usp1 Results in Genomic Instability and a Fanconi Anemia Phenotype

(2009) Jung Min Kim et al.   DEVELOPMENTAL CELL

Extreme hypoxia tolerance of naked mole-rat brain

(2009) John Larson et al.   NEUROREPORT

Influence of local sequence context on damaged base conformation in human DNA polymerase ι: molecular dynamics studies of nucleotide incorporation opposite a benzo[a]pyrene-derived adenine lesion

(2009) Kerry Donny-Clark et al.   NUCLEIC ACIDS RESEARCH

The production of reactive oxygen species by complex I

(2008) Judy Hirst et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Single-strand break repair and genetic disease

(2008) Keith W. Caldecott   NATURE REVIEWS GENETICS