The role of macrobiota in structuring microbial communities along rocky shores

Ammonium cycling in the rocky intertidal: Remineralization, removal, and retention

(2014) Santhiska Pather et al.   LIMNOLOGY AND OCEANOGRAPHY

Disturbance induced decoupling between host genetics and composition of the associated microbiome

(2013) Karl Wegner et al.   BMC MICROBIOLOGY

Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress

(2013) Lu Fan et al.   ISME Journal

Coral reef invertebrate microbiomes correlate with the presence of photosymbionts

(2013) David G Bourne et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Diversity and Abundance of the Bacterial Community of the Red Macroalga Porphyra umbilicalis: Did Bacterial Farmers Produce Macroalgae?

(2013) Lilibeth N. Miranda et al.   PLoS One

The Ecology of Microbial Communities Associated with Macrocystis pyrifera

(2013) Vanessa K. Michelou et al.   PLoS One

Evidence for a persistent microbial seed bank throughout the global ocean

(2013) S. M. Gibbons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterizing and measuring bias in sequence data

(2013) Michael G Ross et al.   GENOME BIOLOGY

Shell biofilm-associated nitrous oxide production in marine molluscs: processes, precursors and relative importance

(2012) Ines M. Heisterkamp et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea

(2012) Mia M Bengtsson et al.   ISME Journal

Pyrosequencing Reveals Diverse and Distinct Sponge-Specific Microbial Communities in Sponges from a Single Geographical Location in Irish Waters

(2012) Stephen A. Jackson et al.   MICROBIAL ECOLOGY

Carbon System Measurements and Potential Climatic Drivers at a Site of Rapidly Declining Ocean pH

(2012) J. Timothy Wootton et al.   PLoS One

Bacterial diversity in the bottom boundary layer of the inner continental shelf of Oregon, USA

(2011) AD Bertagnolli et al.   AQUATIC MICROBIAL ECOLOGY

Composition and dynamics of the gill microbiota of an invasive Indo-Pacific oyster in the eastern Mediterranean Sea

(2011) Dror Zurel et al.   ENVIRONMENTAL MICROBIOLOGY

Marine sponges and their microbial symbionts: love and other relationships

(2011) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community composition in sediments resists perturbation by nutrient enrichment

(2011) Jennifer L Bowen et al.   ISME Journal

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations

(2011) Valerie J McKenzie et al.   ISME Journal

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Regulation of Bacterial Communities Through Antimicrobial Activity by the Coral Holobiont

(2011) E. Charlotte E. Kvennefors et al.   MICROBIAL ECOLOGY

Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function

(2011) John A. Fuerst et al.   NATURE REVIEWS MICROBIOLOGY

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Nutritional Role of Two Algal Symbionts in the Temperate Sea Anemone Anthopleura elegantissima Brandt

(2010) Heather Bergschneider et al.   BIOLOGICAL BULLETIN

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Metagenomic Profiling of a Microbial Assemblage Associated with the California Mussel: A Node in Networks of Carbon and Nitrogen Cycling

(2010) Catherine A. Pfister et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts

(2009) Irene LG Newton et al.   BMC GENOMICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Ammonia-oxidizingCrenarchaeotaand nitrification inside the tissue of a colonial ascidian

(2008) Manuel Martínez-García et al.   ENVIRONMENTAL MICROBIOLOGY