4.7 Article

Curcumin mediates oxaliplatinacquired resistance reversion in colorectal cancer cell lines through modulation of CXC-Chemokine/NF-κB signalling pathway

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SCIENTIFIC REPORTS
Volume 6, Issue -, Pages -

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NATURE PUBLISHING GROUP
DOI: 10.1038/srep24675

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Funding

  1. ISCIII grant [PI1202228]
  2. Departament d'Innovacio, Universitats i Empresa, Generalitat de Catalunya

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Resistance to oxaliplatin (OXA) is a complex process affecting the outcomes of metastatic colorectal cancer (CRC) patients treated with this drug. De-regulation of the NF-kappa B signalling pathway has been proposed as an important mechanism involved in this phenomenon. Here, we show that NF-kappa B was hyperactivated in in vitro models of OXA-acquired resistance but was attenuated by the addition of Curcumin, a non-toxic NF-kappa B inhibitor. The concomitant combination of Curcumin + OXA was more effective and synergistic in cell lines with acquired resistance to OXA, leading to the reversion of their resistant phenotype, through the inhibition of the NF-kappa B signalling cascade. Transcriptomic profiling revealed the up-regulation of three NF-kappa B-regulated CXC-chemokines, CXCL8, CXCL1 and CXCL2, in the resistant cells that were more efficiently down-regulated after OXA + Curcumin treatment as compared to the sensitive cells. Moreover, CXCL8 and CXCL1 gene silencing made resistant cells more sensitive to OXA through the inhibition of the Akt/NF-kappa B pathway. High expression of CXCL1 in FFPE samples from explant cultures of CRC patients-derived liver metastases was associated with response to OXA + Curcumin. In conclusion, we suggest that combination of OXA + Curcumin could be an effective treatment, for which CXCL1 could be used as a predictive marker, in CRC patients.

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Li, Jonathon LeFaive, Aubrey Annis, Sebastian Zollner, Jiongming Wang, Andrew Beck, Ahmadreza Niavarani, Bahareh Sharififard, Rasoul Aliannejad, Zeinab Naderpour, Ali Amirsavadkouhi, Hengameh Ansari Tadi, Afshar Etemadi Aleagha, Saeideh Ahmadi, Seyed Behrooz Mohseni Moghaddam, Alireza Adamsara, Morteza Saeedi, Hamed Abdollahi, Abdolmajid Hosseini, Pajaree Chariyavilaskul, Watsamon Jantarabenjakul, Opass Putchareon, Pattama Torvorapanit, Thanyawee Puthanakit, Nattiya Hirankarn, Pimpayao Sodsai, Monpat Chamnanphon, Thitima B. Suttichet, Vorasuk Shotelersuk, Chureerat Phokaew, Wanna Chetruengchai, Monnat Pongpanich, Pintip Suchartlikitwong, Voraphoj Nilaratanakul, Ben M. Brumpton, Kristian Hveem, Bjorn Olav Asvold, Cristen Willer, Tormod Rogne, Erik Solligard, Lude Franke, Annique Claringbould, Esteban Lopera, Robert Warmerdam, Irene van Blokland, Marike Boezen, Patrick Deelen, Judith M. Vonk, Pauline Lanting, Anil P. S. Ori, Yen-Chen Anne Feng, Scott T. Weiss, Elizabeth W. Karlson, Ann E. Woolley, Jordan W. Smoller, Shawn N. Murphy, James B. Meigs, Robert C. Green, Emma F. Perez, Steven Ascolillo, Ryan C. Thompson, Noam D. Beckmann, Robert P. Sebra, Kyle Gettler, Irene Salib, Marissa Zyndorf, Eric E. Schadt, Brett L. Collins, Tess Levy, Joseph D. Buxbaum, Bari Britvan, Katherine Keller, Lara Tang, Michael Peruggia, Liam L. Hiester, Kristi Niblo, Alexandra Aksentijevich, Alexander Labkowsky, Avromie Karp, Menachem Zlatopolsky, Daniel M. Jordan, Kumardeep Chaudhary, Judy H. Cho, Yuval Itan, Ron Do, Girish N. Nadkarni, Michael Preuss, Ruth J. F. Loos, Gillian M. Belbin, Noura S. Abul-Husn, Eimear E. Kenny, Sam Choi, Paul O'Reilly, Alexander W. Charney, Laura M. Huckins, Manuel A. R. Ferreira, Goncalo R. Abecasis, Michael N. Cantor, Jack A. Kosmicki, Julie E. Horowitz, Aris Baras, Ashish Yadav, Joseph B. Leader, Matthew C. Gass, Anne E. Justice, Geetha Chittoor, Navya Shilpa Josyula, Dave J. Carey, Tooraj Mirshahi, Jouke Jan Hottenga, Meike Bartels, Eco E. J. C. de Geus, Michel M. G. Nivard, Anurag Verma, Marylyn D. Ritchie, Daniel Rader, Shefali S. Verma, Anastasia Lucas, Yuki Bradford, Binglan Li, Malak Abedalthagafi, Fawz Al Harthi, Ebtehal Alsolm, Leen Abu Safieh, Albandary M. Alowayn, Fatimah Alqubaishi, Amal Al Mutairi, Hadeel AlBardis, Sara Alotaibi, Mohammad S. Fawzy, Manal Alaamery, Salam Massadeh, Mansour Almutairi, Abdulraheem Alshareef, Bandar A. Suliman, Mona Sawaji, Abdulaziz AlMalik, Saleh Alqahtani, Dona Baraka, Rana Hasanato, Serghei Mangul, Nora Aljawini, Nour Albesher, Sarah Alkwai, Moneera Alswailm, Iman Almohammed, Yaseen M. Arabi, Ebrahim S. Mahmoud, Amin K. Khattab, Roaa T. Halawani, Ziab Z. Alahmadey, Jehad K. Albakri, Walaa A. Felemban, Laila Al-Awdah, Jahad Alghamdi, Deema AlZahrani, Nouf AlDhawi, Faisal Almalki, Maha Albeladi, Anoud Albader, Sameera AlJohani, Hani Al-Afghani, Eman Barhoush, Bader Alghamdi, Junghyun Jung, May Alrashed, Hugo Zeberg, Tomislav Maricic, Robert Frithiof, Michael Hultstrom, Miklos Lipcsey, Nicolas Tardif, Olav Rooyackers, Jonathan Grip, Oyvind Helgeland, Jennifer R. Harris, Per Magnus, Yunsung Lee, Lill-Iren S. Trogstad, Massimo Mangino, Tim D. Spector, Duncan Emma, Loukas Moutsianas, Mark J. Caulfield, Richard H. Scott, Augusto Rendon, Athanasios Kousathanas, Dorota Pasko, Susan Walker, Alex Stuckey, Christopher A. Odhams, Daniel Rhodes, Tom Fowler, Georgia Chan, Prabhu Arumugam, Daniel J. Wilson, Sarah G. Earle, Shang-Kuan Lin, Nicolas Arning, Jacob Armstrong, Justine K. Rudkin, Chris C. A. Spencer, Nils Koelling, Derrick W. Crook, David H. Wyllie, Anne Marie O'Connell, Gavin Band, Shawneequa Callier, Nicole Soranzo, Jing Hua Zhao, John Danesh, Emanuele Di Angelantonio, Adam S. Butterworth, Yan Sun, Jennifer E. Huffman, Christopher J. O'Donnell, Gina Peloso, Kelly Cho, J. Michael Gaziano, Yuk-Lam Ho, Phil Tsao, James Priest, Sandra P. Smieszek, Christos Polymeropoulos, Vasilios Polymeropoulos, Mihael H. Polymeropoulos, Bartlomiej P. Przychodzen, Israel Fernandez-Cadenas, Laia Llucia-Carol, Natalia Cullell, Elena Muino, Jara Carcel-Marquez, Anna M. Planas, Jordi Perez-Tur, Marta L. DeDiego, Lara Lloret Iglesias, Alex Soriano, Veronica Rico, Daiana Aguero, Josep L. Bedini, Carlos Domingo, Veronica Robles, Francisco Lozano, Francisca Ruiz-Jaen, Leonardo Marquez, Juan Gomez, Eliecer Coto, Guillermo M. Albaiceta, Marta Garcia-Clemente, David Dalmau, Maria J. Arranz, Beatriz Dietl, Alex Serra-Llovich, Pere Soler, Roger Colobran, Andrea Martin-Nalda, Alba Parra Martinez, David Bernardo, Aida Fiz-Lopez, Elisa Arribas, Paloma De La Cal-Sabater, Silvia Rojo, Tomas Segura, Esther Gonzalez-Villa, Gemma Serrano-Heras, Joan Marti-Fabregas, Elena Jimenez-Xarrie, Alicia de Felipe Mimbrera, Jaime Masjuan, Sebastian Garcia-Madrona, Anna Dominguez-Mayoral, Joan Montaner Villalonga, Paloma Menendez-Valladares, Daniel Chasman, Howard D. Sesso, JoAnn E. Manson, Julie E. Buring, Paul M. Ridker, Giulianini Franco, Sulggi Lee, Les Biesecker

NATURE (2022)

Article Cardiac & Cardiovascular Systems

A Polygenic Risk Score Based on a Cardioembolic Stroke Multitrait Analysis Improves a Clinical Prediction Model for This Stroke Subtype

Jara Carcel-Marquez, Elena Muino, Cristina Gallego-Fabrega, Natalia Cullell, Miquel Lledos, Laia Llucia-Carol, Tomas Sobrino, Francisco Campos, Jose Castillo, Marimar Freijo, Juan Francisco Arenillas, Victor Obach, Jose Alvarez-Sabin, Carlos A. Molina, Marc Ribo, Jordi Jimenez-Conde, Jaume Roquer, Lucia Munoz-Narbona, Elena Lopez-Cancio, Monica Millan, Rosa Diaz-Navarro, Cristofol Vives-Bauza, Gemma Serrano-Heras, Tomas Segura, Laura Ibanez, Laura Heitsch, Pilar Delgado, Rajat Dhar, Jerzy Krupinski, Raquel Delgado-Mederos, Luis Prats-Sanchez, Pol Camps-Renom, Natalia Blay, Lauro Sumoy, Rafael de Cid, Joan Montaner, Carlos Cruchaga, Jin-Moo Lee, Joan Marti-Fabregas, Israel Fernandez-Cadenas

Summary: This study identified novel loci associated with cardioembolic strokes (CES) and developed a polygenic risk score (PRS) to better stratify the risk of CES. These findings may guide future clinical trials of anticoagulant therapy in patients with embolic stroke of undetermined source (ESUS) or atrial fibrillation (AF).

FRONTIERS IN CARDIOVASCULAR MEDICINE (2022)

Article Multidisciplinary Sciences

Stroke genetics informs drug discovery and risk prediction across ancestries

Aniket Mishra, Rainer Malik, Tsuyoshi Hachiya, Tuuli Jurgenson, Shinichi Namba, Daniel C. Posner, Frederick K. Kamanu, Masaru Koido, Quentin Le Grand, Mingyang Shi, Yunye He, Marios K. Georgakis, Ilana Caro, Kristi Krebs, Yi-Ching Liaw, Felix C. Vaura, Kuang Lin, Bendik Slagsvold Winsvold, Vinodh Srinivasasainagendra, Livia Parodi, Hee-Joon Bae, Ganesh Chauhan, Michael R. Chong, Liisa Tomppo, Rufus Akinyemi, Gennady V. Roshchupkin, Naomi Habib, Yon Ho Jee, Jesper Qvist Thomassen, Vida Abedi, Jara Carcel-Marquez, Marianne Nygaard, Hampton L. Leonard, Chaojie Yang, Ekaterina Yonova-Doing, Maria J. Knol, Adam J. Lewis, Renae L. Judy, Tetsuro Ago, Philippe Amouyel, Nicole D. Armstrong, Mark K. Bakker, Traci M. Bartz, David A. Bennett, Joshua C. Bis, Constance Bordes, Sigrid Borte, Anael Cain, Paul M. Ridker, Kelly Cho, Zhengming Chen, Carlos Cruchaga, John W. Cole, Phil L. de Jager, Rafael de Cid, Matthias Endres, Leslie E. Ferreira, Mirjam I. Geerlings, Natalie C. Gasca, Vilmundur Gudnason, Jun Hata, Jing He, Alicia K. Heath, Yuk-Lam Ho, Aki S. Havulinna, Jemma C. Hopewell, Hyacinth I. Hyacinth, Michael Inouye, Mina A. Jacob, Christina E. Jeon, Christina Jern, Masahiro Kamouchi, Keith L. Keene, Takanari Kitazono, Steven J. Kittner, Takahiro Konuma, Amit Kumar, Paul Lacaze, Lenore J. Launer, Keon-Joo Lee, Kaido Lepik, Jiang Li, Liming Li, Ani Manichaikul, Hugh S. Markus, Nicholas A. Marston, Thomas Meitinger, Braxton D. Mitchell, Felipe A. Montellano, Takayuki Morisaki, Thomas H. Mosley, Mike A. Nalls, Borge G. Nordestgaard, Martin J. O'Donnell, Yukinori Okada, N. Charlotte Onland-Moret, Bruce Ovbiagele, Annette Peters, Bruce M. Psaty, Stephen S. Rich, Jonathan Rosand, Marc S. Sabatine, Ralph L. Sacco, Danish Saleheen, Else Charlotte Sandset, Veikko Salomaa, Muralidharan Sargurupremraj, Makoto Sasaki, Claudia L. Satizabal, Carsten O. Schmidt, Atsushi Shimizu, Nicholas L. Smith, Kelly L. Sloane, Yoichi Sutoh, Yan V. Sun, Kozo Tanno, Steffen Tiedt, Turgut Tatlisumak, Nuria P. Torres-Aguila, Hemant K. Tiwari, David-Alexandre Tregouet, Stella Trompet, Anil Man Tuladhar, Anne Tybjaerg-Hansen, Marion van Vugt, Riina Vibo, Shefali S. Verma, Kerri L. Wiggins, Patrik Wennberg, Daniel Woo, Peter W. F. Wilson, Huichun Xu, Qiong Yang, Kyungheon Yoon, Joshua C. Bis, Joshua C. Bis, Jin-Moo Lee, Yu-Ching Cheng, James F. Meschia, Wei Min Chen, Michele M. Sale, Alan B. Zonderman, Michele K. Evans, James G. Wilson, Adolfo Correa, Matthew Traylor, Cathryn M. Lewis, Cara L. Carty, Alexander Reiner, Jeffrey Haessler, Carl D. Langefeld, Rebecca F. Gottesman, Kristine Yaffe, Yong Mei Liu, Charles Kooperberg, Leslie A. Lange, Karen L. Furie, Donna K. Arnett, Oscar R. Benavente, Raji P. Grewal, Leema Reddy Peddareddygari, Charles Kooperberg, Charles Kooperberg, Kristian Hveem, Sara Lindstrom, Lu Wang, Erin N. Smith, William Gordon, Astrid van Hylckama Vlieg, Mariza de Andrade, Jennifer A. Brody, Jack W. Pattee, Jeffrey Haessler, Ben M. Brumpton, Pierre Suchon, Ming-Huei Chen, Kelly A. Frazer, Constance Turman, Marine Germain, James MacDonald, Sigrid K. Braekkan, Sebastian M. Armasu, Nathan Pankratz, Rebecca D. Jackson, Jonas B. Nielsen, Franco Giulianini, Marja K. Puurunen, Manal Ibrahim, Susan R. Heckbert, Theo K. Bammler, Bryan M. McCauley, Kent D. Taylor, James S. Pankow, Alexander P. Reiner, Maiken E. Gabrielsen, Jean-Francois Deleuze, Chris J. O'Donnell, Jihye Kim, Barbara McKnight, Peter Kraft, John-Bjarne Hansen, Frits R. Rosendaal, John A. Heit, Weihong Tang, Pierre-Emmanuel Morange, Andrew D. Johnson, Christopher Kabrhel, Ewoud J. van Dijk, Ewoud J. van Dijk, Peter J. Koudstaal, Gert-Jan Luijckx, Paul J. Nederkoorn, Robert J. van Oostenbrugge, Marieke C. Visser, Marieke J. H. Wermer, L. Jaap Kappelle, Tonu Esko, Tonu Esko, Andres Metspalu, Reedik Magi, Mari Nelis, Marguerite R. Irvin, Marguerite R. Irvin, Frank-Erik de Leeuw, Christopher R. Levi, Jane Maguire, Jordi Jimenez-Conde, Pankaj Sharma, Cathie L. M. Sudlow, Kristiina Rannikmae, Reinhold Schmidt, Agnieszka Slowik, Joanna Pera, Vincent N. S. Thijs, Arne G. Lindgren, Andreea Ilinca, Olle Melander, Gunnar Engstrom, Kathryn M. Rexrode, Peter M. Rothwell, Tara M. Stanne, Julie A. Johnson, John Danesh, Adam S. Butterworth, Laura Heitsch, Giorgio B. Boncoraglio, Michiaki Kubo, Alessandro Pezzini, Arndt Rolfs, Anne-Katrin Giese, David Weir, Rebecca D. Jackson, Owen A. Ross, Robin Lemmons, Martin Soderholm, Mary Cushman, Katarina Jood, Caitrin W. McDonough, Steven Bell, Birgit Linkohr, Tsong-Hai Lee, Jukka Putaala, Christopher D. Anderson, Christopher D. Anderson, Oscar L. Lopez, Xueqiu Jian, Ulf Schminke, Natalia Cullell, Pilar Delgado, Laura Ibanez, Jerzy Krupinski, Vasileios Lioutas, Koichi Matsuda, Joan Montaner, Elena Muino, Jaume Roquer, Chloe Sarnowski, Naveed Sattar, Gerli Sibolt, Alexander Teumer, Loes Rutten-Jacobs, Masahiro Kanai, Anne-Katrin Giese, Solveig Gretarsdottir, Natalia S. Rost, Salim Yusuf, Peter Almgren, Hakan Ay, Steve Bevan, Robert D. Brown, Caty Carrera, Julie E. Buring, Wei-Min Chen, Ioana Cotlarciuc, Paul I. W. de Bakker, Anita L. DeStefano, Marcel den Hoed, Qing Duan, Stefan T. Engelter, Guido J. Falcone, Rebecca F. Gottesman, Stefan Gustafsson, Ahamad Hassan, Elizabeth G. Holliday, George Howard, Fang-Chi Hsu, Erik Ingelsson, Tamara B. Harris, Brett M. Kissela, Dawn O. Kleindorfer, Claudia Langenberg, Robin Lemmens, Didier Leys, Wei-Yu Lin, Erik Lorentzen, Patrik K. Magnusson, Patrick F. McArdle, Sara L. Pulit, Kenneth Rice, Saori Sakaue, Bishwa R. Sapkota, Christian Tanislav, Gudmar Thorleifsson, Unnur Thorsteinsdottir, Christophe Tzourio, Cornelia M. van Duijn, Matthew Walters, Nicholas J. Wareham, Najaf Amin, Hugo J. Aparicio, John Attia, Alexa S. Beiser, Claudine Berr, Mariana Bustamante, Valeria Caso, Seung Hoan Choi, Ayesha Chowhan, Jean-Francois Dartigues, Hossein Delavaran, Marcus Dorr, Ian Ford, Wander S. Gurpreet, Anders Hamsten, Atsushi Hozawa, Martin Ingelsson, Motoki Iwasaki, Sara Kaffashian, Lalit Kalra, Olafur Kjartansson, Manja Kloss, Daniel L. Labovitz, Cathy C. Laurie, Linxin Li, Lars Lind, Cecilia M. Lindgren, Hirata Makoto, Naoko Minegishi, Andrew P. Morris, Martina Muller-Nurasyid, Bo Norrving, Soichi Ogishima, Eugenio A. Parati, Nancy L. Pedersen, Markus Perola, Pekka Jousilahti, Silvana Pileggi, Raquel Rabionet, Iolanda Riba-Llena, Marta Ribases, Jose R. Romero, Anthony G. Rudd, Antti-Pekka Sarin, Ralhan Sarju, Mamoru Satoh, Norie Sawada, Asgeir Sigurdsson, Albert Smith, O. Colin Stine, David J. Stott, Konstantin Strauch, Takako Takai, Hideo Tanaka, Emmanuel Touze, Shoichiro Tsugane, Andre G. Uitterlinden, Einar M. Valdimarsson, Sven J. van der Lee, Kenji Wakai, Stephen R. Williams, Charles D. A. Wolfe, Quenna Wong, Taiki Yamaji, Dharambir K. Sanghera, Kari Stefansson, Kent D. Taylor, Nicolas Martinez-Majander, Kenji Sobue, Carolina Soriano-Tarraga, Henry Volzke, Onoja Akpa, Onoja Akpa, Fred S. Sarfo, Albert Akpalu, Reginald Obiako, Kolawole Wahab, Godwin Osaigbovo, Lukman Owolabi, Morenikeji Komolafe, Carolyn Jenkins, Oyedunni Arulogun, Godwin Ogbole, Abiodun M. Adeoye, Joshua Akinyemi, Atinuke Agunloye, Adekunle G. Fakunle, Ezinne Uvere, Abimbola Olalere, Olayinka J. Adebajo, Junshi Chen, Junshi Chen, Robert Clarke, Rory Collins, Yu Guo, Chen Wang, Jun Lv, Richard Peto, Yiping Chen, Zammy Fairhurst-Hunter, Michael Hill, Alfred Pozarickij, Dan Schmidt, Becky Stevens, Iain Turnbull, Canqing Yu, Quentin Le Grand, Quentin Le Grand, Leslie E. Ferreira, Akiko Nagai, Akiko Nagai, Yoishinori Murakami, Mirjam I. Geerlings, Mirjam I. Geerlings, Natalie C. Gasca, Vilmundur Gudnason, Marion van Vugt, Rebecca F. Gottesman, Eric J. Shiroma, Sigurdur Sigurdsson, Mohsen Ghanbari, Eric Boerwinkle, Alexa S. Beiser, Bernard Fongang, Ruiqi Wang, Mohammad K. Ikram, Uwe Volker, Phil L. de Jager, Phil L. de Jager, Rafael de Cid, Borge G. Nordestgaard, Muralidharan Sargurupremraj, Shefali S. Verma, Karlijn F. de Laat, Karlijn F. de Laat, Anouk G. W. van Norden, Paul L. de Kort, Sarah E. Vermeer, Paul J. A. M. Brouwers, Rob A. R. Gons, Paul J. Nederkoorn, Tom den Heijer, Gert W. van Dijk, Frank G. W. van Rooij, Anne H. Aamodt, Anne H. Aamodt, Anne H. Skogholt, Ben M. Brumpton, Cristen J. Willer, Ingrid Heuch, Knut Hagen, Lars G. Fritsche, Linda M. Pedersen, Maiken E. Gabrielsen, Hanne Ellekjaer, Wei Zhou, Amy E. Martinsen, Espen S. Kristoffersen, Jonas B. Nielsen, Kristian Hveem, Laurent F. Thomas, Christoph Kleinschnitz, Christoph Kleinschnitz, Stefan Frantz, Kathrin Ungethum, Cristina Gallego-Fabrega, Cristina Gallego-Fabrega, Miquel Lledos, Laia Llucia-Carol, Tomas Sobrino, Francisco Campos, Jose Castillo, Marimar Freijo, Juan Francisco Arenillas, Victor Obach, Jose Alvarez-Sabin, Carlos A. Molina, Marc Ribo, Lucia Munoz-Narbona, Elena Lopez-Cancio, Monica Millan, Rosa Diaz-Navarro, Cristofol Vives-Bauza, Gemma Serrano-Heras, Tomas Segura, Pilar Delgado, Rajat Dhar, Raquel Delgado-Mederos, Luis Prats-Sanchez, Pol Camps-Renom, Natalia Blay, Lauro Sumoy, Joan Marti-Fabregas, Peter Schnohr, Peter Schnohr, Gorm B. Jensen, Marianne Benn, Shoaib Afzal, Pia R. Kamstrup, Jessica van Setten, Jessica van Setten, Sander W. van der Laan, Jet M. J. Vonk, Bong-Jo Kim, Bong-Jo Kim, Sami Curtze, Sami Curtze, Marjaana Tiainen, Janne Kinnunen, Vilas Menon, Vilas Menon, Yun Ju Sung, Chengran Yang, Florence Saillour-Glenisson, Simon Gravel, N. Charlotte Onland-Moret, N. Charlotte Onland-Moret, Alicia K. Heath, Iona Y. Millwood, Christian Gieger, Toshiharu Ninomiya, Hans J. Grabe, J. Wouter Jukema, Ina L. Rissanen, Daniel Strbian, Young Jin Kim, Pei-Hsin Chen, Ernst Mayerhofer, Joanna M. M. Howson, Marguerite R. Irvin, Hieab Adams, Sylvia Wassertheil-Smoller, Kaare Christensen, Mohammad A. Ikram, Tatjana Rundek, Bradford B. Worrall, G. Mark Lathrop, Moeen Riaz, Eleanor M. Simonsick, Janika Korv, Paulo H. C. Franca, Ramin Zand, Kameshwar Prasad, Ruth Frikke-Schmidt, Frank-Erik de Leeuw, Thomas Liman, Karl Georg Haeusler, Ynte M. Ruigrok, Peter Ulrich Heuschmann, W. T. Longstreth, Keum Ji Jung, Lisa Bastarache, Guillaume Pare, Scott M. Damrauer, Daniel I. Chasman, Jerome I. Rotter, Christopher D. Anderson, John-Anker Zwart, Teemu J. Niiranen, Myriam Fornage, Yung-Po Liaw, Sudha Seshadri, Israel Fernandez-Cadenas, Robin G. Walters, Christian T. Ruff, Mayowa O. Owolabi, Jennifer E. Huffman, Lili Milani, Yoichiro Kamatani, Martin Dichgans, Stephanie Debette

Summary: This study identified 89 independent loci associated with stroke and its subtypes through cross-ancestry GWAS analyses, with high replication rates for both primary and secondary stroke risk loci. It also revealed potential causal genes, variants, and drug targets, and demonstrated the predictive power of genetic risk scores for ischemic stroke across different ancestries.

NATURE (2022)

Article Multidisciplinary Sciences

Rapid and accurate quantification of isomiRs by RT-qPCR

Sandra Franco, Raquel Pluvinet, Jose Francisco Sanchez-Herrero, Lauro Sumoy, Miguel Angel Martinez

Summary: This study presents a simple reverse transcriptase-quantitative polymerase chain reaction (RT-qPCR) assay for quantifying the miR-100-5p_iso_3p:-2 variant. The assay was validated in 57 plasma samples and showed high concordance with high-throughput RNA sequencing results. The method can be easily adapted for quantifying other identified isomiRs, providing greater resolution and accuracy compared to using canonical sequences.

SCIENTIFIC REPORTS (2022)

Correction Multidisciplinary Sciences

Stroke genetics informs drug discovery and risk prediction across ancestries (vol 611, pg 115, 2022)

Aniket Mishra, Rainer Malik, Tsuyoshi Hachiya, Tuuli Jurgenson, Shinichi Namba, Daniel C. Posner, Frederick K. Kamanu, Masaru Koido, Quentin Le Grand, Mingyang Shi, Yunye He, Marios K. Georgakis, Ilana Caro, Kristi Krebs, Yi-Ching Liaw, Felix C. Vaura, Kuang Lin, Bendik Slagsvold Winsvold, Vinodh Srinivasasainagendra, Livia Parodi, Hee-Joon Bae, Ganesh Chauhan, Michael R. Chong, Liisa Tomppo, Rufus Akinyemi, Gennady V. Roshchupkin, Naomi Habib, Yon Ho Jee, Jesper Qvist Thomassen, Vida Abedi, Jara Carcel-Marquez, Marianne Nygaard, Hampton L. Leonard, Chaojie Yang, Ekaterina Yonova-Doing, Maria J. Knol, Adam J. Lewis, Renae L. Judy, Tetsuro Ago, Philippe Amouyel, Nicole D. Armstrong, Mark K. Bakker, Traci M. Bartz, David A. Bennett, Joshua C. Bis, Constance Bordes, Sigrid Borte, Anael Cain, Paul M. Ridker, Kelly Cho, Zhengming Chen, Carlos Cruchaga, John W. Cole, Phil L. de Jager, Rafael de Cid, Matthias Endres, Leslie E. Ferreira, Mirjam I. Geerlings, Natalie C. Gasca, Vilmundur Gudnason, Jun Hata, Jing He, Alicia K. Heath, Yuk-Lam Ho, Aki S. Havulinna, Jemma C. Hopewell, I. Hyacinth Hyacinth, Michael Inouye, Mina A. Jacob, Christina E. Jeon, Christina Jern, Masahiro Kamouchi, Keith L. Keene, Takanari Kitazono, Steven J. Kittner, Takahiro Konuma, Amit Kumar, Paul Lacaze, Lenore J. Launer, Keon-Joo Lee, Kaido Lepik, Jiang Li, Liming Li, Ani Manichaikul, Hugh S. Markus, Nicholas A. Marston, Thomas Meitinger, Braxton D. Mitchell, Felipe A. Montellano, Takayuki Morisaki, Thomas H. Mosley, Mike A. Nalls, Borge G. Nordestgaard, Martin J. O'Donnell, Yukinori Okada, N. Charlotte Onland-Moret, Bruce Ovbiagele, Annette Peters, Bruce M. Psaty, Stephen S. Rich, Jonathan Rosand, Marc S. Sabatine, Ralph L. Sacco, Danish Saleheen, Else Charlotte Sandset, Veikko Salomaa, Muralidharan Sargurupremraj, Makoto Sasaki, Claudia L. Satizabal, Carsten O. Schmidt, Atsushi Shimizu, Nicholas L. Smith, Kelly L. Sloane, Yoichi Sutoh, Yan V. Sun, Kozo Tanno, Steffen Tiedt, Turgut Tatlisumak, Nuria P. Torres-Aguila, Hemant K. Tiwari, David-Alexandre Tregouet, Stella Trompet, Anil Man Tuladhar, Anne Tybjaerg-Hansen, Marion van Vugt, Riina Vibo, Shefali S. Verma, Kerri L. Wiggins, Patrik Wennberg, Daniel Woo, Peter W. F. Wilson, Huichun Xu, Qiong Yang, Kyungheon Yoon, Iona Y. Millwood, Christian Gieger, Toshiharu Ninomiya, Hans J. Grabe, J. Wouter Jukema, Ina L. Rissanen, Daniel Strbian, Young Jin Kim, Pei-Hsin Chen, Ernst Mayerhofer, Joanna M. M. Howson, Marguerite R. Irvin, Hieab Adams, Sylvia Wassertheil-Smoller, Kaare Christensen, Mohammad A. Ikram, Tatjana Rundek, Bradford B. Worrall, G. Mark Lathrop, Moeen Riaz, Eleanor M. Simonsick, Janika Korv, Paulo H. C. Franca, Ramin Zand, Kameshwar Prasad, Ruth Frikke-Schmidt, Frank-Erik de Leeuw, Thomas Liman, Karl Georg Haeusler, Ynte M. Ruigrok, Peter Ulrich Heuschmann, W. T. Longstreth, Keum Ji Jung, Lisa Bastarache, Guillaume Pare, Scott M. Damrauer, Daniel I. Chasman, Jerome I. Rotter, Christopher D. Anderson, John-Anker Zwart, Teemu J. Niiranen, Myriam Fornage, Yung-Po Liaw, Sudha Seshadri, Israel Fernandez-Cadenas, Robin G. Walters, Christian T. Ruff, Mayowa O. Owolabi, Jennifer E. Huffman, Lili Milani, Yoichiro Kamatani, Martin Dichgans, Stephanie Debette

NATURE (2022)

Article Multidisciplinary Sciences

Monitoring SARS-CoV-2 variant transitions using differences in diagnostic cycle threshold values of target genes

Antoni E. Bordoy, Veronica Saludes, David Panisello Yague, Gemma Clara, Laia Soler, Alexia Paris de Leon, Cristina Casan, Ana Blanco-Suarez, Mercedes Guerrero-Murillo, Beatriz Rodriguez-Ponga, Marc Noguera-Julian, Francesc Catala-Moll, Irina Pey, Maria Pilar Armengol, Maria Casadella, Mariona Parera, Raquel Pluvinet, Lauro Sumoy, Bonaventura Clotet, Montserrat Gimenez, Elisa Martro, Pere-Joan Cardona, Ignacio Blanco

Summary: Monitoring the emergence of new SARS-CoV-2 variants is crucial for identifying potential risks. This study investigated the use of real-time reverse transcriptase polymerase chain reaction (RT-PCR) routine diagnostics data to identify variants of concern. By analyzing the cycle threshold (Ct) values and conducting whole genome sequencing (WGS), the study achieved high sensitivity and specificity in predicting the presence of new variants at early stages of circulation. Tracking the trends of Ct values in the population, combined with WGS, could be valuable for real-time management and response to local epidemics.

SCIENTIFIC REPORTS (2022)

No Data Available