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A methylation-switchable conformational probe for the sensitive and selective detection of RNA demethylase activity

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Adaptive Response Enzyme AlkB Preferentially Repairs 1-Methylguanine and 3-Methylthymine Adducts in Double-Stranded DNA

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Additive CHARMM force field for naturally occurring modified ribonucleotides

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The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA

(2016) Dan Dominissini et al.   NATURE

Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome

(2016) Xiaoyu Li et al.   Nature Chemical Biology

Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets

(2016) Gunaseelan Goldsmith et al.   PLoS One

Visualizing the formation of an RNA folding intermediate through a fast highly modular secondary structure switch

(2016) Yi Xue et al.   Nature Communications

Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings

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Structure and Thermodynamics of N6-Methyladenosine in RNA: A Spring-Loaded Base Modification

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Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations

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New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey

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Increasing occurrences and functional roles for high energy purine-pyrimidine base-pairs in nucleic acids

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Ribonucleotides in DNA: Origins, repair and consequences

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Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange

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How a Low-Fidelity DNA Polymerase Chooses Non-Watson–Crick from Watson–Crick Incorporation

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Insights into RNA structure and function from genome-wide studies

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The dynamic epitranscriptome: N6-methyladenosine and gene expression control

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Invisible RNA state dynamically couples distant motifs

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Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics

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Characterizing the Protonation State of Cytosine in Transient G·C Hoogsteen Base Pairs in Duplex DNA

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Unusual base pairing during the decoding of a stop codon by the ribosome

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NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers

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Using chemical shift perturbation to characterise ligand binding

(2013) Mike P. Williamson   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Solution Structure of the Dickerson DNA Dodecamer Containing a Single Ribonucleotide

(2012) Eugene F. DeRose et al.   BIOCHEMISTRY

Structure of human DNA polymerase iota and the mechanism of DNA synthesis

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Chemical Shifts in Nucleic Acids Studied by Density Functional Theory Calculations and Comparison with Experiment

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Probing Transient Hoogsteen Hydrogen Bonds in Canonical Duplex DNA Using NMR Relaxation Dispersion and Single-Atom Substitution

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Synthesis of (6-13C)Pyrimidine Nucleotides as Spin-Labels for RNA Dynamics

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Enhanced Base-Pair Opening in the Adenine Tract of a RNA Double Helix

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Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA

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Transient Hoogsteen base pairs in canonical duplex DNA

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Genome-wide measurement of RNA secondary structure in yeast

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Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs

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Structure determination of DNA methylation lesions N 1 -meA and N 3 -meC in duplex DNA using a cross-linked protein–DNA system

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Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs

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Effect of 1-methyladenine on thermodynamic stabilities of double-helical DNA structures

(2009) Hao Yang et al.   FEBS LETTERS

CHARMM: The biomolecular simulation program

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Extending the Range of Microsecond-to-Millisecond Chemical Exchange Detected in Labeled and Unlabeled Nucleic Acids by Selective Carbon R1ρNMR Spectroscopy

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Effect of 1-methyladenine on double-helical DNA structures

(2008) Hao Yang et al.   FEBS LETTERS

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

(2008) Xiang-Jun Lu et al.   Nature Protocols

Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex

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