RPANDA: an R package for macroevolutionary analyses on phylogenetic trees

A new dynamic null model for phylogenetic community structure

(2015) Alex L. Pigot et al.   ECOLOGY LETTERS

Phylogenies support out-of-equilibrium models of biodiversity

(2015) Marc Manceau et al.   ECOLOGY LETTERS

Deciphering the evolution of birdwing butterflies 150 years after Alfred Russel Wallace

(2015) Fabien L. Condamine et al.   Scientific Reports

Solving Differential Equations inR: PackagedeSolve

(2015) Karline Soetaert et al.   Journal of Statistical Software

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

Phylogenetic approaches for studying diversification

(2014) Hélène Morlon   ECOLOGY LETTERS

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Faster Speciation and Reduced Extinction in the Tropics Contribute to the Mammalian Latitudinal Diversity Gradient

(2014) Jonathan Rolland et al.   PLOS BIOLOGY

Fast simulation of reconstructed phylogenies under global time-dependent birth–death processes

(2013) Sebastian Höhna   BIOINFORMATICS

Macroevolutionary perspectives to environmental change

(2013) Fabien L. Condamine et al.   ECOLOGY LETTERS

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

A Bayesian framework to estimate diversification rates and their variation through time and space

(2011) Daniele Silvestro et al.   BMC EVOLUTIONARY BIOLOGY

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

(2011) R. S. Etienne et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Simulating Trees with a Fixed Number of Extant Species

(2011) Tanja Stadler   SYSTEMATIC BIOLOGY

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

(2010) N. Lartillot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring the Dynamics of Diversification: A Coalescent Approach

(2010) Hélène Morlon et al.   PLOS BIOLOGY

Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics

(2009) Susanne A. Fritz et al.   ECOLOGY LETTERS

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

(2008) James C. Zachos et al.   NATURE