A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers

S-Score: A Scoring System for the Identification and Prioritization of Predicted Cancer Genes

(2014) Jorge E. S. de Souza et al.   PLoS One

DNA Repair Pathway Selection Caused by Defects in TEL1, SAE2, and De Novo Telomere Addition Generates Specific Chromosomal Rearrangement Signatures

(2014) Christopher D. Putnam et al.   PLoS Genetics

Emerging landscape of oncogenic signatures across human cancers

(2013) Giovanni Ciriello et al.   NATURE GENETICS

Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia

(2013)   NEW ENGLAND JOURNAL OF MEDICINE

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps

(2013) Andrei Zinovyev et al.   PLoS Computational Biology

Distinct SUMO Ligases Cooperate with Esc2 and Slx5 to Suppress Duplication-Mediated Genome Rearrangements

(2013) Claudio P. Albuquerque et al.   PLoS Genetics

Tbf1 and Vid22 promote resection and non-homologous end joining of DNA double-strand break ends

(2012) Diego Bonetti et al.   EMBO JOURNAL

Predicting the Functional, Molecular, and Phenotypic Consequences of Amino Acid Substitutions using Hidden Markov Models

(2012) Hashem A. Shihab et al.   HUMAN MUTATION

Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae

(2012) Mohan Babu et al.   NATURE

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Bioinformatic identification of genes suppressing genome instability

(2012) C. D. Putnam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural mutations in cancer: mechanistic and functional insights

(2012) Koichiro Inaki et al.   TRENDS IN GENETICS

Rapid Analysis of Saccharomyces cerevisiae Genome Rearrangements by Multiplex Ligation–Dependent Probe Amplification

(2012) Jason E. Chan et al.   PLoS Genetics

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components

(2011) Peter C. Stirling et al.   PLoS Genetics

A Genetic and Structural Study of Genome Rearrangements Mediated by High Copy Repeat Ty1 Elements

(2011) Jason E. Chan et al.   PLoS Genetics

The Telomere-Binding Protein Tbf1 Demarcates snoRNA Gene Promoters in Saccharomyces cerevisiae

(2010) Milena Preti et al.   MOLECULAR CELL

A Consensus of Core Protein Complex Compositions for Saccharomyces cerevisiae

(2010) Joris J. Benschop et al.   MOLECULAR CELL

The DNA Damage Response: Making It Safe to Play with Knives

(2010) Alberto Ciccia et al.   MOLECULAR CELL

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

MutationTaster evaluates disease-causing potential of sequence alterations

(2010) Jana Marie Schwarz et al.   NATURE METHODS

Susceptibility Pathways in Fanconi's Anemia and Breast Cancer

(2010) Alan D. D'Andrea   NEW ENGLAND JOURNAL OF MEDICINE

Post-Replication Repair Suppresses Duplication-Mediated Genome Instability

(2010) Christopher D. Putnam et al.   PLoS Genetics

DNA end resection: Many nucleases make light work

(2009) Eleni P. Mimitou et al.   DNA REPAIR

Identification of deleterious mutations within three human genomes

(2009) S. Chun et al.   GENOME RESEARCH

Specific pathways prevent duplication-mediated genome rearrangements

(2009) Christopher D. Putnam et al.   NATURE

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols

Stabilization of Dicentric Translocations through Secondary Rearrangements Mediated by Multiple Mechanisms in S. cerevisiae

(2009) Vincent Pennaneach et al.   PLoS One

Mph1p promotes gross chromosomal rearrangement through partial inhibition of homologous recombination

(2008) Soma Banerjee et al.   JOURNAL OF CELL BIOLOGY

From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions

(2008) Igor Ulitsky et al.   Molecular Systems Biology

Up-to-date catalogues of yeast protein complexes

(2008) Shuye Pu et al.   NUCLEIC ACIDS RESEARCH

Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data

(2008) Sourav Bandyopadhyay et al.   PLoS Computational Biology