The Shine-Dalgarno sequence of riboswitch-regulated single mRNAs shows ligand-dependent accessibility bursts

Kinetic fingerprinting to identify and count single nucleic acids

(2015) Alexander Johnson-Buck et al.   NATURE BIOTECHNOLOGY

Preface — Riboswitches

(2014) Tina M. Henkin   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Structure and function of preQ 1 riboswitches

(2014) Catherine D. Eichhorn et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

PyCorrFit--generic data evaluation for fluorescence correlation spectroscopy

(2014) P. Muller et al.   BIOINFORMATICS

Genetic Analysis of Riboswitch-mediated Transcriptional Regulation Responding to Mn2+inSalmonella

(2014) Yixin Shi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Multiple roles of the coding sequence 5′ end in gene expression regulation

(2014) Tamir Tuller et al.   NUCLEIC ACIDS RESEARCH

Bacterial translational regulations: high diversity between all mRNAs and major role in gene expression

(2013) Flora Picard et al.   BMC GENOMICS

Initiation of mRNA decay in bacteria

(2013) Soumaya Laalami et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure

(2013) Krishna C. Suddala et al.   NUCLEIC ACIDS RESEARCH

Folding and ligand recognition of the TPP riboswitch aptamer at single-molecule resolution

(2013) Andrea Haller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Secondary structure of bacteriophage T4 gene 60 mRNA: Implications for translational bypassing

(2013) G. C. Todd et al.   RNA

On the importance of cotranscriptional RNA structure formation

(2013) D. Lai et al.   RNA

Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells

(2012) Daniel Hebenstreit et al.   CURRENT OPINION IN CELL BIOLOGY

Hidden complexity in the isomerization dynamics of Holliday junctions

(2012) Changbong Hyeon et al.   Nature Chemistry

Folding energy landscape of the thiamine pyrophosphate riboswitch aptamer

(2012) P. C. Anthony et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual-acting riboswitch control of translation initiation and mRNA decay

(2012) M.-P. Caron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cellular Decision Making and Biological Noise: From Microbes to Mammals

(2011) Gábor Balázsi et al.   CELL

Comparison of a PreQ1Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation

(2011) Jermaine L. Jenkins et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Removal of Covalent Heterogeneity Reveals Simple Folding Behavior for P4-P6 RNA

(2011) Max Greenfeld et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Prospects for Riboswitch Discovery and Analysis

(2011) Ronald R. Breaker   MOLECULAR CELL

Conformational capture of the SAM-II riboswitch

(2011) Andrea Haller et al.   Nature Chemical Biology

General properties of transcriptional time series in Escherichia coli

(2011) Lok-hang So et al.   NATURE GENETICS

Tuning Riboswitch Regulation through Conformational Selection

(2010) Ross C. Wilson et al.   JOURNAL OF MOLECULAR BIOLOGY

Drawing inferences from Fano factor calculations

(2010) Uri T. Eden et al.   JOURNAL OF NEUROSCIENCE METHODS

Conformational dynamics of single pre-mRNA molecules during in vitro splicing

(2010) John Abelson et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Experimental evolution of bet hedging

(2009) Hubertus J. E. Beaumont et al.   NATURE

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

(2008) Elizabeth E. Regulski et al.   MOLECULAR MICROBIOLOGY

A practical guide to single-molecule FRET

(2008) Rahul Roy et al.   NATURE METHODS

Leakage and slow allostery limit performance of single drug-sensing aptazyme molecules based on the hammerhead ribozyme

(2008) C. de Silva et al.   RNA