Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku
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Title
Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku
Authors
Keywords
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Journal
Nature Communications
Volume 7, Issue -, Pages 13270
Publisher
Springer Nature
Online
2016-11-10
DOI
10.1038/ncomms13270
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Note: Only part of the references are listed.- Influence of riboflavin on the reduction of radionuclides by Shewanella oneidenis MR-1
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- (2015) Larry A. Gallagher et al. JOURNAL OF BACTERIOLOGY
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- (2015) Matthew T. Cabeen et al. MOLECULAR MICROBIOLOGY
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- (2015) Kristof Vandewalle et al. Nature Communications
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- (2014) Anne Sydow et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Comparisons of Shewanella strains based on genome annotations, modeling, and experiments
- (2014) Wai Ong et al. BMC Systems Biology
- The Yeast Deletion Collection: A Decade of Functional Genomics
- (2014) Guri Giaever et al. GENETICS
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- (2014) Steffen Porwollik et al. PLoS One
- High-throughput platform for the discovery of elicitors of silent bacterial gene clusters
- (2014) M. R. Seyedsayamdost PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components
- (2014) S. Pirbadian et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sulfur-mediated electron shuttling during bacterial iron reduction
- (2014) T. M. Flynn et al. SCIENCE
- Genome-Scale Metabolic Network Validation of Shewanella oneidensis Using Transposon Insertion Frequency Analysis
- (2014) Hong Yang et al. PLoS Computational Biology
- scikit-image: image processing in Python
- (2014) Stéfan van der Walt et al. PeerJ
- Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
- (2013) Tim van Opijnen et al. NATURE REVIEWS MICROBIOLOGY
- Sequence-Defined Transposon Mutant Library of Burkholderia thailandensis
- (2013) L. A. Gallagher et al. mBio
- Flavin Electron Shuttles Dominate Extracellular Electron Transfer by Shewanella oneidensis
- (2013) N. J. Kotloski et al. mBio
- A functional description of CymA, an electron-transfer hub supporting anaerobic respiratory flexibility inShewanella
- (2012) Sophie J. Marritt et al. BIOCHEMICAL JOURNAL
- On conducting electron traffic across the periplasm: Figure 1
- (2012) Jeffrey A. Gralnick BIOCHEMICAL SOCIETY TRANSACTIONS
- Mind the gap: diversity and reactivity relationships among multihaem cytochromes of the MtrA/DmsE family
- (2012) Kathryn D. Bewley et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- The prototypic class Ia ribonucleotide reductase fromEscherichia coli: still surprising after all these years
- (2012) Edward J. Brignole et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Anomalies of the anaerobic tricarboxylic acid cycle inShewanella oneidensisrevealed by Tn-seq
- (2012) Evan D. Brutinel et al. MOLECULAR MICROBIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The NumPy Array: A Structure for Efficient Numerical Computation
- (2011) Stéfan van der Walt et al. COMPUTING IN SCIENCE & ENGINEERING
- Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries
- (2011) Andrew L Goodman et al. Nature Protocols
- Towards Electrosynthesis in Shewanella: Energetics of Reversing the Mtr Pathway for Reductive Metabolism
- (2011) Daniel E. Ross et al. PLoS One
- Drosophila P elements preferentially transpose to replication origins
- (2011) A. C. Spradling et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ARNold: A web tool for the prediction of Rho-independent transcription terminators
- (2011) Magali Naville et al. RNA Biology
- Evidence-Based Annotation of Gene Function in Shewanella oneidensis MR-1 Using Genome-Wide Fitness Profiling across 121 Conditions
- (2011) Adam Deutschbauer et al. PLoS Genetics
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat
- (2009) Andrew L. Goodman et al. Cell Host & Microbe
- DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis
- (2009) Y. Erlich et al. GENOME RESEARCH
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- (2009) J. B. Rollefson et al. JOURNAL OF BACTERIOLOGY
- Update on the Keio collection of Escherichia coli single-gene deletion mutants
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- (2008) Derek R Lovley CURRENT OPINION IN BIOTECHNOLOGY
- Electron transfer at the microbe–mineral interface: a grand challenge in biogeochemistry
- (2008) J. K. FREDRICKSON et al. Geobiology
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- (2008) L. Shi et al. JOURNAL OF BACTERIOLOGY
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- (2008) Véronique de Berardinis et al. Molecular Systems Biology
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