Comparisons of Shewanella strains based on genome annotations, modeling, and experiments

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

(2013) J. M. Monk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Functional Differences in Metabolic Networks Using Comparative Genomics and Constraint-Based Models

(2012) Joshua J. Hamilton et al.   PLoS One

Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142

(2012) Trang T. Vu et al.   PLoS Computational Biology

Large-Scale Comparative Phenotypic and Genomic Analyses Reveal Ecological Preferences of Shewanella Species and Identify Metabolic Pathways Conserved at the Genus Level

(2011) Jorge L. M. Rodrigues et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Evidence-Based Annotation of Gene Function in Shewanella oneidensis MR-1 Using Genome-Wide Fitness Profiling across 121 Conditions

(2011) Adam Deutschbauer et al.   PLoS Genetics

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

(2010) Dmitry A Rodionov et al.   BMC GENOMICS

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

(2010) Grigoriy E. Pinchuk et al.   PLoS Computational Biology

Comparative systems biology across an evolutionary gradient within the Shewanella genus

(2009) K. T. Konstantinidis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Mobile Elements and Pseudogenes in the Shewanella oneidensis MR-1 Genome

(2008) M. F. Romine et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Towards environmental systems biology of Shewanella

(2008) James K. Fredrickson et al.   NATURE REVIEWS MICROBIOLOGY