Quantitative approaches for investigating the spatial context of gene expression
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Quantitative approaches for investigating the spatial context of gene expression
Authors
Keywords
-
Journal
Wiley Interdisciplinary Reviews-Systems Biology and Medicine
Volume 9, Issue 2, Pages e1369
Publisher
Wiley
Online
2016-12-22
DOI
10.1002/wsbm.1369
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Multiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution
- (2016) Emily Lauren Sylwestrak et al. CELL
- Single-molecule RNA detection at depth by hybridization chain reaction and tissue hydrogel embedding and clearing
- (2016) Sheel Shah et al. DEVELOPMENT
- Clearing and Labeling Techniques for Large-Scale Biological Tissues
- (2016) Jinyoung Seo et al. MOLECULES AND CELLS
- Epithelial tricellular junctions act as interphase cell shape sensors to orient mitosis
- (2016) Floris Bosveld et al. NATURE
- Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues
- (2016) Taeyun Ku et al. NATURE BIOTECHNOLOGY
- The quest for multiplexed spatially resolved transcriptional profiling
- (2016) Carolina Wählby NATURE METHODS
- Dense transcript profiling in single cells by image correlation decoding
- (2016) Ahmet F Coskun et al. NATURE METHODS
- Nanoscale imaging of RNA with expansion microscopy
- (2016) Fei Chen et al. NATURE METHODS
- Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
- (2016) P. L. Stahl et al. SCIENCE
- Whole-organism lineage tracing by combinatorial and cumulative genome editing
- (2016) Aaron McKenna et al. SCIENCE
- Genome-wide CRISPR Screen in a Mouse Model of Tumor Growth and Metastasis
- (2015) Sidi Chen et al. CELL
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Positional information and reaction-diffusion: two big ideas in developmental biology combine
- (2015) J. B. A. Green et al. DEVELOPMENT
- Spatial reconstruction of single-cell gene expression data
- (2015) Rahul Satija et al. NATURE BIOTECHNOLOGY
- High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin
- (2015) Kaia Achim et al. NATURE BIOTECHNOLOGY
- Fixed single-cell transcriptomic characterization of human radial glial diversity
- (2015) Elliot R Thomsen et al. NATURE METHODS
- Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues
- (2015) Je Hyuk Lee et al. Nature Protocols
- DeCoN: Genome-wide Analysis of In Vivo Transcriptional Dynamics during Pyramidal Neuron Fate Selection in Neocortex
- (2015) Bradley J. Molyneaux et al. NEURON
- Spatially resolved, highly multiplexed RNA profiling in single cells
- (2015) K. H. Chen et al. SCIENCE
- Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
- (2015) Erik Arner et al. SCIENCE
- Genome-wide RNA Tomography in the Zebrafish Embryo
- (2014) Jan Philipp Junker et al. CELL
- Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
- (2014) Barbara Treutlein et al. NATURE
- Validation of noise models for single-cell transcriptomics
- (2014) Dominic Grün et al. NATURE METHODS
- Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue
- (2014) Ditte Lovatt et al. NATURE METHODS
- Single-cell in situ RNA profiling by sequential hybridization
- (2014) Eric Lubeck et al. NATURE METHODS
- Spatially resolved transcriptomics and beyond
- (2014) Nicola Crosetto et al. NATURE REVIEWS GENETICS
- Highly Multiplexed Subcellular RNA Sequencing in Situ
- (2014) J. H. Lee et al. SCIENCE
- The Cell-Cycle State of Stem Cells Determines Cell Fate Propensity
- (2013) Siim Pauklin et al. CELL
- Structural and molecular interrogation of intact biological systems
- (2013) Kwanghun Chung et al. NATURE
- In situ sequencing for RNA analysis in preserved tissue and cells
- (2013) Rongqin Ke et al. NATURE METHODS
- Single-cell sequencing-based technologies will revolutionize whole-organism science
- (2013) Ehud Shapiro et al. NATURE REVIEWS GENETICS
- Composability of regulatory sequences controlling transcription and translation inEscherichia coli
- (2013) Sriram Kosuri et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cancer Genome Landscapes
- (2013) B. Vogelstein et al. SCIENCE
- Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells
- (2013) Ophir Shalem et al. SCIENCE
- Cell-free Formation of RNA Granules: Bound RNAs Identify Features and Components of Cellular Assemblies
- (2012) Tina W. Han et al. CELL
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
- (2012) Daniel Ramsköld et al. NATURE BIOTECHNOLOGY
- Single-cell systems biology by super-resolution imaging and combinatorial labeling
- (2012) Eric Lubeck et al. NATURE METHODS
- Mechanical Control of Morphogenesis by Fat/Dachsous/Four-Jointed Planar Cell Polarity Pathway
- (2012) F. Bosveld et al. SCIENCE
- CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification
- (2012) Tamar Hashimshony et al. Cell Reports
- Tumor Metastasis: Molecular Insights and Evolving Paradigms
- (2011) Scott Valastyan et al. CELL
- Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
- (2011) S. Islam et al. GENOME RESEARCH
- Tumour evolution inferred by single-cell sequencing
- (2011) Nicholas Navin et al. NATURE
- Validating transcripts with probes and imaging technology
- (2011) Shalev Itzkovitz et al. NATURE METHODS
- Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells
- (2010) Bo Huang et al. CELL
- Variability in gene expression underlies incomplete penetrance
- (2010) Arjun Raj et al. NATURE
- In situ detection and genotyping of individual mRNA molecules
- (2010) Chatarina Larsson et al. NATURE METHODS
- Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
- (2009) Madeleine P Ball et al. NATURE BIOTECHNOLOGY
- Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human
- (2009) Kun Zhang et al. NATURE METHODS
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays
- (2009) R. Drmanac et al. SCIENCE
- Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
- (2009) J. B. Li et al. SCIENCE
- A Robust Approach to Identifying Tissue-Specific Gene Expression Regulatory Variants Using Personalized Human Induced Pluripotent Stem Cells
- (2009) Je-Hyuk Lee et al. PLoS Genetics
- Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
- (2008) Arjun Raj et al. CELL
- Direct multiplexed measurement of gene expression with color-coded probe pairs
- (2008) Gary K Geiss et al. NATURE BIOTECHNOLOGY
- Imaging individual mRNA molecules using multiple singly labeled probes
- (2008) Arjun Raj et al. NATURE METHODS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now