Embracing the mantra of modellers and synthesizing omics, experiments and models

Synthetic Ecology of Microbes: Mathematical Models and Applications

(2016) Ali R. Zomorrodi et al.   JOURNAL OF MOLECULAR BIOLOGY

Chemotaxis toward phytoplankton drives organic matter partitioning among marine bacteria

(2016) Steven Smriga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone

(2016) Stilianos Louca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward a Predictive Understanding of Earth’s Microbiomes to Address 21st Century Challenges

(2016) Martin J. Blaser et al.   mBio

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

(2016) Edoardo Pasolli et al.   PLoS Computational Biology

Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents

(2015) Daniel C Reed et al.   ISME Journal

Calibration and analysis of genome-based models for microbial ecology

(2015) Stilianos Louca et al.   eLife

Global prevalence and distribution of genes and microorganisms involved in mercury methylation

(2015) M. Podar et al.   Science Advances

Gene-centric approach to integrating environmental genomics and biogeochemical models

(2014) Daniel C. Reed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrating microbial ecology into ecosystem models: challenges and priorities

(2011) Kathleen K. Treseder et al.   BIOGEOCHEMISTRY

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

(2010) D. E. Canfield et al.   SCIENCE