How Next-Generation Sequencing and Multiscale Data Analysis Will Transform Infectious Disease Management

Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing

(2015) Samia N. Naccache et al.   CLINICAL INFECTIOUS DISEASES

Evaluation of GS Junior and MiSeq next-generation sequencing technologies as an alternative to Trugene population sequencing in the clinical HIV laboratory

(2015) Daniela Ram et al.   JOURNAL OF VIROLOGICAL METHODS

Clostridium difficile Infection

(2015) Daniel A. Leffler et al.   NEW ENGLAND JOURNAL OF MEDICINE

Development of phenotype algorithms using electronic medical records and incorporating natural language processing

(2015) K. P. Liao et al.   BMJ-British Medical Journal

Development of phenotype algorithms using electronic medical records and incorporating natural language processing

(2015) K. P. Liao et al.   BMJ-British Medical Journal

The clinical management of HCV in the HIV-infected patient

(2014) Brianna Norton et al.   ANTIVIRAL THERAPY

Innovation of Novel Antibiotics: An Economic Perspective

(2014) Michael R. McKellar et al.   CLINICAL INFECTIOUS DISEASES

Antimicrobial Stewardship Programs in Inpatient Hospital Settings: A Systematic Review

(2014) Brittin Wagner et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing

(2014) N. C. Gordon et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A study in transfer learning: leveraging data from multiple hospitals to enhance hospital-specific predictions

(2014) J. Wiens et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture

(2014) K. D. Mandl et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

A predictive fitness model for influenza

(2014) Marta Łuksza et al.   NATURE

ORAL ABSTRACTS

(2014) G. Wang et al.   Open Forum Infectious Diseases

Comparing the accuracy of syndrome surveillance systems in detecting influenza-like illness: GUARDIAN vs. RODS vs. electronic medical record reports

(2013) Julio C. Silva et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

The "Epic" Challenge of Optimizing Antimicrobial Stewardship: The Role of Electronic Medical Records and Technology

(2013) R. Kullar et al.   CLINICAL INFECTIOUS DISEASES

The CLIPMERGE PGx Program: Clinical Implementation of Personalized Medicine Through Electronic Health Records and Genomics–Pharmacogenomics

(2013) O Gottesman et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Integration of Technology Into Clinical Practice

(2013) Christopher D. Doern   CLINICS IN LABORATORY MEDICINE

The Electronic Medical Records and Genomics (eMERGE) Network: past, present and future

(2013) Omri Gottesman et al.   GENETICS IN MEDICINE

Transcriptional profiling in infectious diseases: Ready for prime time?

(2013) Asuncion Mejias et al.   JOURNAL OF INFECTION

A social network of hospital acquired infection built from electronic medical record data

(2013) Marco Cusumano-Towner et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Electronic health records-driven phenotyping: challenges, recent advances, and perspectives

(2013) Jyotishman Pathak et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing

(2013) David W. Eyre et al.   NEW ENGLAND JOURNAL OF MEDICINE

Using the Electronic Medical Record to Identify Community-Acquired Pneumonia: Toward a Replicable Automated Strategy

(2013) Sylvain DeLisle et al.   PLoS One

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

Predicting Response to Antiretroviral Treatment by Machine Learning: The EuResist Project

(2012) Maurizio Zazzi et al.   INTERVIROLOGY

Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project

(2012) Susan Rea et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

A Glimpse of the Next 100 Years in Medicine

(2012) Isaac S. Kohane et al.   NEW ENGLAND JOURNAL OF MEDICINE

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

(2012) P. R. McAdam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

(2012) Claudio U. Köser et al.   PLoS Pathogens

A translational engine at the national scale: informatics for integrating biology and the bedside

(2011) Isaac S Kohane et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany

(2011) David A. Rasko et al.   NEW ENGLAND JOURNAL OF MEDICINE

Identifying Hosts of Families of Viruses: A Machine Learning Approach

(2011) Anil Raj et al.   PLoS One

The 10 × ‘20 Initiative: Pursuing a Global Commitment to Develop 10 New Antibacterial Drugs by 2020

(2010)   CLINICAL INFECTIOUS DISEASES

Prediction of response to antiretroviral therapy by human experts and by the EuResist data-driven expert system (the EVE study)

(2010) M Zazzi et al.   HIV MEDICINE

Clinical Practice Guidelines for Clostridium difficile Infection in Adults: 2010 Update by the Society for Healthcare Epidemiology of America (SHEA) and the Infectious Diseases Society of America (IDSA)

(2010) Stuart H. Cohen et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Detection and treatment options for Klebsiella pneumoniae carbapenemases (KPCs): an emerging cause of multidrug-resistant infection

(2010) Elizabeth B. Hirsch et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Rapid Molecular Detection of Tuberculosis and Rifampin Resistance

(2010) Catharina C. Boehme et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Origin of the Haitian Cholera Outbreak Strain

(2010) Chen-Shan Chin et al.   NEW ENGLAND JOURNAL OF MEDICINE

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans

(2008) Troy D Querec et al.   NATURE IMMUNOLOGY

Automated Identification of Acute Hepatitis B Using Electronic Medical Record Data to Facilitate Public Health Surveillance

(2008) Michael Klompas et al.   PLoS One

Surveillance Sans Frontières: Internet-Based Emerging Infectious Disease Intelligence and the HealthMap Project

(2008) John S Brownstein et al.   PLOS MEDICINE