Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates

The early spread and epidemic ignition of HIV-1 in human populations

(2014) N. R. Faria et al.   SCIENCE

Gaussian Process-Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies

(2013) Julia A. Palacios et al.   BIOMETRICS

The global distribution and burden of dengue

(2013) Samir Bhatt et al.   NATURE

Improving Bayesian Population Dynamics Inference: A Coalescent-Based Model for Multiple Loci

(2012) M. S. Gill et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effective/census population size ratio estimation: a compendium and appraisal

(2012) Friso P. Palstra et al.   Ecology and Evolution

Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon

(2011) Nuno R. Faria et al.   INFECTION GENETICS AND EVOLUTION

Skyline-plot methods for estimating demographic history from nucleotide sequences

(2011) SIMON Y. W. HO et al.   Molecular Ecology Resources

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

Impact of CCR5delta32 Host Genetic Background and Disease Progression on HIV-1 Intrahost Evolutionary Processes: Efficient Hypothesis Testing through Hierarchical Phylogenetic Models

(2010) D. Edo-Matas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Withering Away--25,000 Years of Genetic Decline Preceded Cave Bear Extinction

(2010) M. Stiller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Viral phylodynamics and the search for an 'effective number of infections'

(2010) S. D. W. Frost et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

(2010) P. F. Campos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three roads diverged? Routes to phylogeographic inference

(2010) Erik W. Bloomquist et al.   TRENDS IN ECOLOGY & EVOLUTION

The Evolution of HIV-1 Diversity in Rural Cameroon and its Implications in Vaccine Design and Trials

(2010) Rebecca Powell et al.   Viruses-Basel

Phylodynamics of Infectious Disease Epidemics

(2009) Erik M. Volz et al.   GENETICS

Epidemic Dynamics Revealed in Dengue Evolution

(2009) S.N. Bennett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selection dramatically reduces effective population size in HIV-1 infection

(2008) Yi Liu et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

The Prevalence of Diverse HIV-1 Strains Was Stable in Cameroonian Blood Donors From 1996 to 2004

(2008) Catherine A Brennan et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory

(2007) Q. D. Atkinson et al.   MOLECULAR BIOLOGY AND EVOLUTION