How Do Cold-Adapted Plants Respond to Climatic Cycles? Interglacial Expansion Explains Current Distribution and Genomic Diversity in Primula farinosa L.

How do SNP ascertainment schemes and population demographics affect inferences about population history?

(2015) Emily Jane McTavish et al.   BMC GENOMICS

Approximate Bayesian Computation Reveals the Crucial Role of Oceanic Islands for the Assembly of Continental Biodiversity

(2015) Jairo Patiño et al.   SYSTEMATIC BIOLOGY

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Climate refugia: joint inference from fossil records, species distribution models and phylogeography

(2014) Daniel G. Gavin et al.   NEW PHYTOLOGIST

Microsatellite Marker Analysis Reveals the Complex Phylogeographic History of Rhododendron ferrugineum (Ericaceae) in the Pyrenees

(2014) Olivia Charrier et al.   PLoS One

Heterostyly accelerates diversification via reduced extinction in primroses

(2014) J. M. de Vos et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Improving species distribution models: the value of data on abundance

(2014) Christine Howard et al.   Methods in Ecology and Evolution

SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it

(2013) Joseph Lachance et al.   BIOESSAYS

Topo-climatic microrefugia explain the persistence of a rare endemic plant in the Alps during the last 21 millennia

(2013) Theofania S. Patsiou et al.   GLOBAL CHANGE BIOLOGY

Divergent and narrower climatic niches characterize polyploid species of European primroses inPrimulasect.Aleuritia

(2013) Spyros Theodoridis et al.   JOURNAL OF BIOGEOGRAPHY

Ignoring Heterozygous Sites Biases Phylogenomic Estimates of Divergence Times: Implications for the Evolutionary History of Microtus Voles

(2013) Heidi E.L. Lischer et al.   MOLECULAR BIOLOGY AND EVOLUTION

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Ecological niche models in phylogeographic studies: applications, advances and precautions

(2013) Diego F. Alvarado-Serrano et al.   Molecular Ecology Resources

Fit-for-Purpose: Species Distribution Model Performance Depends on Evaluation Criteria – Dutch Hoverflies as a Case Study

(2013) Jesús Aguirre-Gutiérrez et al.   PLoS One

Introgression and Phenotypic Assimilation in Zimmerius Flycatchers (Tyrannidae): Population Genetic and Phylogenetic Inferences from Genome-Wide SNPs

(2013) Frank E. Rheindt et al.   SYSTEMATIC BIOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Cryptic or mystic? Glacial tree refugia in northern Europe

(2013) P.C. Tzedakis et al.   TRENDS IN ECOLOGY & EVOLUTION

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Predicting present and future intra-specific genetic structure through niche hindcasting across 24 millennia

(2012) Anahí Espíndola et al.   ECOLOGY LETTERS

Building the niche through time: using 13,000 years of data to predict the effects of climate change on three tree species in Europe

(2012) L. Maiorano et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Phylogenies from RAD Sequence Data

(2012) Benjamin E. R. Rubin et al.   PLoS One

High-Throughput Identification of Informative Nuclear Loci for Shallow-Scale Phylogenetics and Phylogeography

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

The Promises and Pitfalls of Next-Generation Sequencing Data in Phylogeography

(2012) Bryan Carstens et al.   SYSTEMATIC BIOLOGY

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Extinction debt of high-mountain plants under twenty-first-century climate change

(2012) Stefan Dullinger et al.   Nature Climate Change

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Expansion Dating: Calibrating Molecular Clocks in Marine Species from Expansions onto the Sunda Shelf Following the Last Glacial Maximum

(2011) E. D. Crandall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

The niche, biogeography and species interactions

(2011) J. J. Wiens   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Applications of species distribution modeling to paleobiology

(2011) Jens-Christian Svenning et al.   QUATERNARY SCIENCE REVIEWS

Beyond Predictions: Biodiversity Conservation in a Changing Climate

(2011) T. P. Dawson et al.   SCIENCE

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Biodiversity and Climate Change: Integrating Evolutionary and Ecological Responses of Species and Communities

(2010) Sébastien Lavergne et al.   Annual Review of Ecology Evolution and Systematics

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Sampling in ecology and evolution - bridging the gap between theory and practice

(2010) Cécile H. Albert et al.   ECOGRAPHY

Population Structure With Localized Haplotype Clusters

(2010) S. R. Browning et al.   GENETICS

21st century climate change threatens mountain flora unequally across Europe

(2010) ROBIN ENGLER et al.   GLOBAL CHANGE BIOLOGY

Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

(2010) R J Haasl et al.   HEREDITY

Testing a relict distributional pattern of fen plant and terrestrial snail species at the Holocene scale: a null model approach

(2010) Michal Hájek et al.   JOURNAL OF BIOGEOGRAPHY

Bayesian Inference of the Demographic History of Chimpanzees

(2010) D. Wegmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

(2010) T. I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics

Bayesian Computation and Model Selection Without Likelihoods

(2009) C. Leuenberger et al.   GENETICS

Predicting the past distribution of species climatic niches

(2009) David Nogués-Bravo   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Biological Flora of the British Isles:Primula verisL.

(2009) Rein Brys et al.   JOURNAL OF ECOLOGY

A Last Glacial Maximum pollen record from Bodmin Moor showing a possible cryptic northern refugium in southwest England

(2009) Ann Kelly et al.   JOURNAL OF QUATERNARY SCIENCE

A Statistical Evaluation of Models for the Initial Settlement of the American Continent Emphasizes the Importance of Gene Flow with Asia

(2009) N. Ray et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cold climate plants in a warmer world

(2009) Robert M.M. Crawford   Plant Ecology & Diversity

Refugia revisited: individualistic responses of species in space and time

(2009) J. R. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-latitude climate sensitivity to ice-sheet forcing over the last 120kyr

(2009) Joy S. Singarayer et al.   QUATERNARY SCIENCE REVIEWS

Disentangling Reticulate Evolution in an Arctic–Alpine Polyploid Complex

(2009) Alessia Guggisberg et al.   SYSTEMATIC BIOLOGY

Alpine–subalpine species richness of the Romanian Carpathians and the current conservation status of rare species

(2008) Gheorghe Coldea et al.   BIODIVERSITY AND CONSERVATION

Phylogeography ofPulsatilla vernalis(L.) Mill. (Ranunculaceae): chloroplast DNA reveals two evolutionary lineages across central Europe and Scandinavia

(2008) Michał Ronikier et al.   JOURNAL OF BIOGEOGRAPHY

A discussion of different types of glacial refugia used in mountain biogeography and phylogeography

(2008) Rolf Holderegger et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography: retrospect and prospect

(2008) John C. Avise   JOURNAL OF BIOGEOGRAPHY

High genetic differentiation in the alpine plantCampanula alpinaJacq. (Campanulaceae): evidence for glacial survival in several Carpathian regions and long-term isolation between the Carpathians and the Alps

(2008) M. RONIKIER et al.   MOLECULAR ECOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION

Demographic History of European Populations of Arabidopsis thaliana

(2008) Olivier François et al.   PLoS Genetics