Translocation dynamics of knotted polymers under a constant or periodic external field

Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging

(2016) Nicholas Keller et al.   Nature Physics

Periodic forces trigger knot untying during translocation of knotted proteins

(2016) Piotr Szymczak   Scientific Reports

Jamming of Knots along a Tensioned Chain

(2016) Vivek Narsimhan et al.   ACS Macro Letters

Topological events in single molecules of E. coli DNA confined in nanochannels

(2015) Jeffrey G. Reifenberger et al.   ANALYST

Metastable Knots in Confined Semiflexible Chains

(2015) Liang Dai et al.   MACROMOLECULES

Solid friction between soft filaments

(2015) Andrew Ward et al.   NATURE MATERIALS

Origin of Metastable Knots in Single Flexible Chains

(2015) Liang Dai et al.   PHYSICAL REVIEW LETTERS

Single-molecule sensing with nanopores

(2015) Murugappan Muthukumar et al.   PHYSICS TODAY

Stretching self-entangled DNA molecules in elongational fields

(2015) C. Benjamin Renner et al.   Soft Matter

Pore Translocation of Knotted Polymer Chains: How Friction Depends on Knot Complexity

(2015) Antonio Suma et al.   ACS Macro Letters

Enhanced electrohydrodynamic collapse of DNA due to dilute polymers

(2014) C. Benjamin Renner et al.   Biomicrofluidics

Effect of charge patterns along a solid-state nanopore on polyelectrolyte translocation

(2014) H. H. Katkar et al.   JOURNAL OF CHEMICAL PHYSICS

A first look at the Oxford Nanopore MinION sequencer

(2014) Alexander S. Mikheyev et al.   Molecular Ecology Resources

Polymer translocation: the first two decades and the recent diversification

(2014) Vladimir V. Palyulin et al.   Soft Matter

Knotting of linear DNA in nano-slits and nano-channels: a numerical study

(2013) Enzo Orlandini et al.   JOURNAL OF BIOLOGICAL PHYSICS

Slowing down DNA Translocation through a Nanopore in Lithium Chloride

(2012) Stefan W. Kowalczyk et al.   NANO LETTERS

Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase

(2012) Elizabeth A Manrao et al.   NATURE BIOTECHNOLOGY

Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision

(2012) Gerald M Cherf et al.   NATURE BIOTECHNOLOGY

Topological Jamming of Spontaneously Knotted Polyelectrolyte Chains Driven Through a Nanopore

(2012) A. Rosa et al.   PHYSICAL REVIEW LETTERS

Nanopore sensors for nucleic acid analysis

(2011) Bala Murali Venkatesan et al.   Nature Nanotechnology

Polymers with spatial or topological constraints: Theoretical and computational results

(2011) Cristian Micheletti et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Compression and self-entanglement of single DNA molecules under uniform electric field

(2011) J. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biophysics of Knotting

(2010) Dario Meluzzi et al.   Annual Review of Biophysics

Nanopore Analysis of Nucleic Acids Bound to Exonucleases and Polymerases

(2010) David Deamer   Annual Review of Biophysics

Driven polymer translocation through nanopores: Slow-vs.-fast dynamics

(2010) K. Luo et al.   EPL

Virus Cell-to-Cell Transmission

(2010) W. Mothes et al.   JOURNAL OF VIROLOGY

Ionic Memcapacitive Effects in Nanopores

(2010) Matt Krems et al.   NANO LETTERS

Electronic Signatures of all Four DNA Nucleosides in a Tunneling Gap

(2010) Shuai Chang et al.   NANO LETTERS

Continuous base identification for single-molecule nanopore DNA sequencing

(2009) James Clarke et al.   Nature Nanotechnology

Origin of the electrophoretic force on DNA in solid-state nanopores

(2009) Stijn van Dorp et al.   Nature Physics

Entangled chain dynamics of polymer knots in extensional flow

(2009) Demosthenes Kivotides et al.   PHYSICAL REVIEW E

Knot-Controlled Ejection of a Polymer from a Virus Capsid

(2009) Richard Matthews et al.   PHYSICAL REVIEW LETTERS

Nanoscopic Porous Sensors

(2008) John J. Kasianowicz et al.   Annual Review of Analytical Chemistry

Translocation of a knotted polypeptide through a pore

(2008) Lei Huang et al.   JOURNAL OF CHEMICAL PHYSICS

The potential and challenges of nanopore sequencing

(2008) Daniel Branton et al.   NATURE BIOTECHNOLOGY

Hydrodynamic correlations in the translocation of a biopolymer through a nanopore: Theory and multiscale simulations

(2008) Maria Fyta et al.   PHYSICAL REVIEW E

Noise in solid-state nanopores

(2008) R. M. M. Smeets et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA topoisomerases: harnessing and constraining energy to govern chromosome topology

(2008) Allyn J. Schoeffler et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Detection of DNA Sequences Using an Alternating Electric Field in a Nanopore Capacitor

(2007) Grigori Sigalov et al.   NANO LETTERS