Astonishing 35S rDNA diversity in the gymnosperm species Cycas revoluta Thunb

Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating

(2015) Fabien L Condamine et al.   BMC EVOLUTIONARY BIOLOGY

Angiosperms Are Unique among Land Plant Lineages in the Occurrence of Key Genes in the RNA-Directed DNA Methylation (RdDM) Pathway

(2015) Lu Ma et al.   Genome Biology and Evolution

Analysis of the giant genomes ofFritillaria(Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

(2015) Laura J. Kelly et al.   NEW PHYTOLOGIST

Age-associated alterations in the somatic mutation and DNA methylation levels in plants

(2015) A. S. Dubrovina et al.   PLANT BIOLOGY

Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA inAsclepias(Apocynaceae)

(2015) Kevin Weitemier et al.   PeerJ

Dead Element Replicating: Degenerate R2 Element Replication and rDNA Genomic Turnover in the Bacillus rossius Stick Insect (Insecta: Phasmida)

(2015) Francesco Martoni et al.   PLoS One

Incomplete sequence homogenization in 45S rDNA multigene families: intermixed IGS heterogeneity within the single NOR locus of the polyploid species Medicago arborea (Fabaceae)

(2014) José A. Galián et al.   ANNALS OF BOTANY

Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae)

(2014) Khatere Emadzade et al.   ANNALS OF BOTANY

Genetic diversity, genetic structure and demographic history of Cycas simplicipinna (Cycadaceae) assessed by DNA sequences and SSR markers

(2014) Xiuyan Feng et al.   BMC PLANT BIOLOGY

An ancient satellite DNA has maintained repetitive units of the original structure in most species of the living fossil plant genus Zamia

(2014) Donata Cafasso et al.   GENOME

When fathers are instant losers: homogenization of rDNA loci in recently formedCardamine × schulziitrigenomic allopolyploid

(2014) Judita Zozomová-Lihová et al.   NEW PHYTOLOGIST

Endogenous pararetrovirus sequences associated with 24 nt small RNAs at the centromeres ofFritillaria imperialisL. (Liliaceae), a species with a giant genome

(2014) Hannes Becher et al.   PLANT JOURNAL

Ecological and evolutionary significance of genomic GC content diversity in monocots

(2014) Petr Šmarda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ribosomal DNA Sequence Heterogeneity Reflects Intraspecies Phylogenies and Predicts Genome Structure in Two Contrasting Yeast Species

(2014) Claire West et al.   SYSTEMATIC BIOLOGY

DNA methylation as a system of plant genomic immunity

(2014) M. Yvonne Kim et al.   TRENDS IN PLANT SCIENCE

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Dancing together and separate again: gymnosperms exhibit frequent changes of fundamental 5S and 35S rRNA gene (rDNA) organisation

(2013) S Garcia et al.   HEREDITY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Next-generation sequencing and genome evolution in allopolyploids

(2012) Richard J. A. Buggs et al.   AMERICAN JOURNAL OF BOTANY

Distribution of 45S rDNA sites in chromosomes of plants: Structural and evolutionary implications

(2012) Fernando Roa et al.   BMC EVOLUTIONARY BIOLOGY

Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids

(2012) Roman Matyášek et al.   BMC GENOMICS

Early evolutionary colocalization of the nuclear ribosomal 5S and 45S gene families in seed plants: evidence from the living fossil gymnosperm Ginkgo biloba

(2012) J A Galián et al.   HEREDITY

Ecological and genetic factors linked to contrasting genome dynamics in seed plants

(2012) A. R. Leitch et al.   NEW PHYTOLOGIST

Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis

(2012) C. Melamed-Bessudo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Regulation of ribosomal RNA gene copy number and its role in modulating genome integrity and evolutionary adaptability in yeast

(2011) Takehiko Kobayashi   CELLULAR AND MOLECULAR LIFE SCIENCES

Characterization of Eu- and Heterochromatin of Citrus with a Focus on the Condensation Behavior of 45S rDNA Chromatin

(2011) A. Marques et al.   CYTOGENETIC AND GENOME RESEARCH

GC-Biased Gene Conversion Impacts Ribosomal DNA Evolution in Vertebrates, Angiosperms, and Other Eukaryotes

(2011) Juan S. Escobar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Monitoring the Rate and Dynamics of Concerted Evolution in the Ribosomal DNA Repeats of Saccharomyces cerevisiae Using Experimental Evolution

(2011) Austen R.D. Ganley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise

(2009) Judith Fehrer et al.   BMC EVOLUTIONARY BIOLOGY

High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: Incomplete concerted evolution and the origin of pseudogenes

(2009) Long-Qian Xiao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Linkage of 35S and 5S rRNA genes in Artemisia (family Asteraceae): first evidence from angiosperms

(2008) Sònia Garcia et al.   CHROMOSOMA

Molecular cytogenetics of forest trees

(2008) T. Ribeiro et al.   CYTOGENETIC AND GENOME RESEARCH

The effect of transposon Pokey insertions on sequence variation in the 28S rRNA gene of Daphnia pulex

(2008) Shiona K. Glass et al.   GENOME

The asymmetric meiosis in pentaploid dogroses (Rosa sect. Caninae) is associated with a skewed distribution of rRNA gene families in the gametes

(2008) A Kovarik et al.   HEREDITY

Non-concerted ITS evolution, early origin and phylogenetic utility of ITS pseudogenes in Pyrus

(2008) Xiaoyan Zheng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION