Endogenous pararetrovirus sequences associated with 24 nt small RNAs at the centromeres ofFritillaria imperialisL. (Liliaceae), a species with a giant genome

Evolutionary relationships in the medicinally important genus Fritillaria L. (Liliaceae)

(2014) Peter D. Day et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres

(2014) H. Zhang et al.   PLANT CELL

DNA methylation as a system of plant genomic immunity

(2014) M. Yvonne Kim et al.   TRENDS IN PLANT SCIENCE

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Intragenomic Conflict Between the Two Major Knob Repeats of Maize

(2013) Lisa B. Kanizay et al.   GENETICS

Three Infectious Viral Species Lying in Wait in the Banana Genome

(2013) M. Chabannes et al.   JOURNAL OF VIROLOGY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

(2013) Simon Renny-Byfield et al.   PLANT JOURNAL

Endogenous pararetroviruses—a reservoir of virus infection in plants

(2013) Matthieu Chabannes et al.   Current Opinion in Virology

RECONSTRUCTING THE COMPLEX EVOLUTIONARY ORIGIN OF WILD ALLOPOLYPLOID TOBACCOS (NICOTIANASECTIONSUAVEOLENTES)

(2012) Laura J. Kelly et al.   EVOLUTION

Ecological and genetic factors linked to contrasting genome dynamics in seed plants

(2012) A. R. Leitch et al.   NEW PHYTOLOGIST

Why size really matters when sequencing plant genomes

(2012) Laura J. Kelly et al.   Plant Ecology & Diversity

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Exploring giant plant genomes with next-generation sequencing technology

(2011) Laura J. Kelly et al.   CHROMOSOME RESEARCH

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

(2011) S. Renny-Byfield et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

Plant centromeric retrotransposons: a structural and cytogenetic perspective

(2011) Pavel Neumann et al.   Mobile DNA

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Small RNA-mediated epigenetic modifications in plants

(2010) Stacey A Simon et al.   CURRENT OPINION IN PLANT BIOLOGY

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

(2009) Carlos Llorens et al.   Biology Direct

Major Evolutionary Transitions in Centromere Complexity

(2009) Harmit S. Malik et al.   CELL

Centromeres: long intergenic spaces with adaptive features

(2009) Lisa Kanizay et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Fall and rise of satellite repeats in allopolyploids of Nicotiana over c. 5 million years

(2009) Blazena Koukalova et al.   NEW PHYTOLOGIST

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Epigenetic regulation of heterochromatic DNA stability

(2008) Jamy C Peng et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT