标题
Nascent RNA sequencing reveals distinct features in plant transcription
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 113, Issue 43, Pages 12316-12321
出版商
Proceedings of the National Academy of Sciences
发表日期
2016-10-12
DOI
10.1073/pnas.1603217113
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The core promoter: At the heart of gene expression
- (2015) Yehuda M. Danino et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Nascent Transcription Affected by RNA Polymerase IV in Zea mays
- (2015) Karl F. Erhard et al. GENETICS
- Human Promoters Are Intrinsically Directional
- (2015) Sascha H.C. Duttke et al. MOLECULAR CELL
- Getting up to speed with transcription elongation by RNA polymerase II
- (2015) Iris Jonkers et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- FASCIATED EAR4Encodes a bZIP Transcription Factor That Regulates Shoot Meristem Size in Maize
- (2015) Michael Pautler et al. PLANT CELL
- Core Promoter Plasticity Between Maize Tissues and Genotypes Contrasts with Predominance of Sharp Transcription Initiation Sites
- (2015) María Katherine Mejía-Guerra et al. PLANT CELL
- Genome-Wide Prediction and Validation of Intergenic Enhancers in Arabidopsis Using Open Chromatin Signatures
- (2015) Bo Zhu et al. PLANT CELL
- Regulatory link between DNA methylation and active demethylation inArabidopsis
- (2015) Mingguang Lei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution and diversification of the basal transcription machinery
- (2015) Sascha H.C. Duttke TRENDS IN BIOCHEMICAL SCIENCES
- Nascent Transcription Affected by RNA Polymerase IV in Zea mays
- (2015) Karl F. Erhard et al. GENETICS
- Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
- (2014) Matthew T. Weirauch et al. CELL
- TRF2 and the evolution of the bilateria
- (2014) Sascha H.C. Duttke et al. GENES & DEVELOPMENT
- Enhancer RNA Facilitates NELF Release from Immediate Early Genes
- (2014) Katie Schaukowitch et al. MOLECULAR CELL
- Paired-End Analysis of Transcription Start Sites inArabidopsisReveals Plant-Specific Promoter Signatures
- (2014) Taj Morton et al. PLANT CELL
- Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana
- (2014) Alessandra M. Sullivan et al. Cell Reports
- Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
- (2013) Michael T. Y. Lam et al. NATURE
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production
- (2012) Chongyuan Luo et al. PLANT JOURNAL
- RNA Polymerase II Pausing Downstream of Core Histone Genes Is Different from Genes Producing Polyadenylated Transcripts
- (2012) Krishanpal Anamika et al. PLoS One
- Identification of Nitrogen Starvation-Responsive MicroRNAs in Arabidopsis thaliana
- (2012) Gang Liang et al. PLoS One
- Divergent transcription: A new feature of active promoters
- (2011) Amy C. Seila et al. CELL CYCLE
- Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
- (2011) Dong Wang et al. NATURE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks
- (2011) Celina Costas et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities
- (2011) C. G. de Boer et al. NUCLEIC ACIDS RESEARCH
- Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility
- (2010) Yong-Chun Zuo et al. GENOMICS
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Relationship between nucleosome positioning and DNA methylation
- (2010) Ramakrishna K. Chodavarapu et al. NATURE
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- The INTACT method for cell type–specific gene expression and chromatin profiling in Arabidopsis thaliana
- (2010) Roger B Deal et al. Nature Protocols
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae
- (2010) L. Carretero-Paulet et al. PLANT PHYSIOLOGY
- Regulation of gene expression via the core promoter and the basal transcriptional machinery
- (2009) Tamar Juven-Gershon et al. DEVELOPMENTAL BIOLOGY
- Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
- (2009) Szymon Swiezewski et al. NATURE
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize
- (2009) X. Wang et al. PLANT CELL
- Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis
- (2009) Yoshiharu Y. Yamamoto et al. PLANT JOURNAL
- Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila
- (2009) S. Nechaev et al. SCIENCE
- The Antisense Transcriptomes of Human Cells
- (2008) Yiping He et al. SCIENCE
- RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
- (2008) Pascal Preker et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now