Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets

Harnessing Natural Sequence Variation to Dissect Posttranscriptional Regulatory Networks in Yeast

(2014) Mina Fazlollahi et al.   G3-Genes Genomes Genetics

Finding the sources of missing heritability in a yeast cross

(2013) Joshua S. Bloom et al.   NATURE

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

(2012) Pimlapas Leekitcharoenphon et al.   BMC GENOMICS

Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway

(2012) R. Scott McIsaac et al.   MOLECULAR BIOLOGY OF THE CELL

Combinatorial control of diverse metabolic and physiological functions by transcriptional regulators of the yeast sulfur assimilation pathway

(2012) Allegra A. Petti et al.   MOLECULAR BIOLOGY OF THE CELL

Characterizing the roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30

(2012) Emilio Carrillo et al.   MOLECULAR BIOLOGY OF THE CELL

Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast

(2012) R. Scott McIsaac et al.   NUCLEIC ACIDS RESEARCH

Analysis of variation at transcription factor binding sites in Drosophila and humans

(2012) Mikhail Spivakov et al.   GENOME BIOLOGY

Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex

(2011) T. Siggers et al.   Molecular Systems Biology

Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction

(2010) Matthew Hansen et al.   Algorithms for Molecular Biology

Correlating Gene Expression Variation with cis-Regulatory Polymorphism in Saccharomyces cerevisiae

(2010) Kevin Chen et al.   Genome Biology and Evolution

Systems genetics: The added value of gene expression

(2010) Peter M. Visscher et al.   HFSP Journal

Identifying the genetic determinants of transcription factor activity

(2010) Eunjee Lee et al.   Molecular Systems Biology

Genetic analysis of variation in transcription factor binding in yeast

(2010) Wei Zheng et al.   NATURE

Variation in Transcription Factor Binding Among Humans

(2010) M. Kasowski et al.   SCIENCE

Genotype to Phenotype: A Complex Problem

(2010) R. D. Dowell et al.   SCIENCE

Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans

(2010) M. V. Rockman et al.   SCIENCE

High-resolution DNA-binding specificity analysis of yeast transcription factors

(2009) C. Zhu et al.   GENOME RESEARCH

Dissection of Combinatorial Control by the Met4 Transcriptional Complex

(2009) Traci A. Lee et al.   MOLECULAR BIOLOGY OF THE CELL

Harnessing gene expression to identify the genetic basis of drug resistance

(2009) Bo-Juen Chen et al.   Molecular Systems Biology

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells

(2009) Kai Wang et al.   NATURE BIOTECHNOLOGY

Modularity and interactions in the genetics of gene expression

(2009) O. Litvin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression

(2008) André Boorsma et al.   PLoS One

Gene–Environment Interaction in Yeast Gene Expression

(2008) Erin N Smith et al.   PLOS BIOLOGY