Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 113, Issue 47, Pages E7428-E7437
Publisher
Proceedings of the National Academy of Sciences
Online
2016-11-04
DOI
10.1073/pnas.1603577113
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A predictive computational framework for direct reprogramming between human cell types
- (2016) Owen J L Rackham et al. NATURE GENETICS
- Past Roadblocks and New Opportunities in Transcription Factor Network Mapping
- (2016) Michael R. Brent TRENDS IN GENETICS
- A Systematic Approach to Identify Candidate Transcription Factors that Control Cell Identity
- (2015) Ana C. D’Alessio et al. Stem Cell Reports
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Dissecting Engineered Cell Types and Enhancing Cell Fate Conversion via CellNet
- (2014) Samantha A. Morris et al. CELL
- CellNet: Network Biology Applied to Stem Cell Engineering
- (2014) Patrick Cahan et al. CELL
- Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors
- (2014) Patrick Kemmeren et al. CELL
- Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
- (2014) Matthew T. Weirauch et al. CELL
- Transcription analysis of recombinant industrial and laboratory Saccharomyces cerevisiae strains reveals the molecular basis for fermentation of glucose and xylose
- (2014) Akinori Matsushika et al. Microbial Cell Factories
- Normalization of RNA-seq data using factor analysis of control genes or samples
- (2014) Davide Risso et al. NATURE BIOTECHNOLOGY
- A brief history of synthetic biology
- (2014) D. Ewen Cameron et al. NATURE REVIEWS MICROBIOLOGY
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- A blueprint for engineering cell fate: current technologies to reprogram cell identity
- (2013) Samantha A Morris et al. CELL RESEARCH
- Mapping functional transcription factor networks from gene expression data
- (2013) B. C. Haynes et al. GENOME RESEARCH
- Contextualizing context for synthetic biology - identifying causes of failure of synthetic biological systems
- (2012) Stefano Cardinale et al. Biotechnology Journal
- "Calling Cards" for DNA-Binding Proteins in Mammalian Cells
- (2012) H. Wang et al. GENETICS
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- Wisdom of crowds for robust gene network inference
- (2012) Daniel Marbach et al. NATURE METHODS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- Direct Lineage Conversion of Terminally Differentiated Hepatocytes to Functional Neurons
- (2011) Samuele Marro et al. Cell Stem Cell
- Calling Cards enable multiplexed identification of the genomic targets of DNA-binding proteins
- (2011) H. Wang et al. GENOME RESEARCH
- ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species
- (2011) Aaron T. Spivak et al. NUCLEIC ACIDS RESEARCH
- Toward an Integrated Model of Capsule Regulation in Cryptococcus neoformans
- (2011) Brian C. Haynes et al. PLoS Pathogens
- A Decade of Systems Biology
- (2010) Han-Yu Chuang et al. Annual Review of Cell and Developmental Biology
- Engineering industrial Saccharomyces cerevisiae strains for xylose fermentation and comparison for switchgrass conversion
- (2010) Ronald E. Hector et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network
- (2010) Germán Plata et al. Molecular Systems Biology
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- A quantitative model of glucose signaling in yeast reveals an incoherent feed forward loop leading to a specific, transient pulse of transcription
- (2010) S. Kuttykrishnan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lessons from the DREAM2 Challenges
- (2009) Gustavo Stolovitzky et al. Annals of the New York Academy of Sciences
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Programming cells by multiplex genome engineering and accelerated evolution
- (2009) Harris H. Wang et al. NATURE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Expression of a heterologous xylose transporter in a Saccharomyces cerevisiae strain engineered to utilize xylose improves aerobic xylose consumption
- (2008) Ronald E. Hector et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae
- (2008) Laura Salusjärvi et al. Microbial Cell Factories
- Nsf1/Ypl230w participates in transcriptional activation during non-fermentative growth and in response to salt stress in Saccharomyces cerevisiae
- (2008) C. Hlynialuk et al. MICROBIOLOGY-SGM
- PU.1 and C/EBP / convert fibroblasts into macrophage-like cells
- (2008) R. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biofuel alternatives to ethanol: pumping the microbial well
- (2008) J.L. Fortman et al. TRENDS IN BIOTECHNOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More