Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis

Genome-wide analysis of the R2R3-MYB transcription factor genes in Chinese cabbage (Brassica rapa ssp. pekinensis) reveals their stress and hormone responsive patterns

(2015) Zhen Wang et al.   BMC GENOMICS

Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea

(2015) Ankur R Bhardwaj et al.   BMC PLANT BIOLOGY

Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signaling

(2015) Mehanathan Muthamilarasan et al.   Frontiers in Plant Science

Annotation of gene function in citrus using gene expression information and co-expression networks

(2014) Darren CJ Wong et al.   BMC PLANT BIOLOGY

Genome-wide identification of WRKY family genes and their response to cold stress in Vitis vinifera

(2014) Lina Wang et al.   BMC PLANT BIOLOGY

C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses

(2014) Mehanathan Muthamilarasan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Expression of Root-Related Transcription Factors Associated with Flooding Tolerance of Soybean (Glycine max)

(2014) Babu Valliyodan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification and expression analysis of WRKY family genes under biotic and abiotic stresses in Brassica rapa

(2014) Md. Abdul Kayum et al.   MOLECULAR GENETICS AND GENOMICS

The abiotic stress-responsive NAC-type transcription factor SlNAC4 regulates salt and drought tolerance and stress-related genes in tomato (Solanum lycopersicum)

(2014) Mingku Zhu et al.   PLANT CELL REPORTS

Genome-Wide Investigation and Expression Analyses of WD40 Protein Family in the Model Plant Foxtail Millet (Setaria italica L.)

(2014) Awdhesh Kumar Mishra et al.   PLoS One

Systematic Identification of Cell-Wall Related Genes in Populus Based on Analysis of Functional Modules in Co-Expression Network

(2014) Bin Cai et al.   PLoS One

Identification and Molecular Characterization of MYB Transcription Factor Superfamily in C4 Model Plant Foxtail Millet (Setaria italica L.)

(2014) Mehanathan Muthamilarasan et al.   PLoS One

Genome-Wide Investigation and Expression Profiling of AP2/ERF Transcription Factor Superfamily in Foxtail Millet (Setaria italica L.)

(2014) Charu Lata et al.   PLoS One

Genome sequence of mungbean and insights into evolution within Vigna species

(2014) Yang Jae Kang et al.   Nature Communications

VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine)

(2013) Darren CJ Wong et al.   BMC GENOMICS

The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups

(2013) Guangjun Yin et al.   BMC PLANT BIOLOGY

PLANEX: the plant co-expression database

(2013) Won Yim et al.   BMC PLANT BIOLOGY

TEMPERATURE AND DROUGHT STRESS EFFECTS ON GROWTH AND DEVELOPMENT OF BAMBARA GROUNDNUT (VIGNA SUBTERRANEA L.)

(2013) IBRAHEEM AL SHAREEF et al.   EXPERIMENTAL AGRICULTURE

A chloroplast-targeted DnaJ protein contributes to maintenance of photosystem II under chilling stress

(2013) Fanying Kong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of Genes Involved in the Response of Arabidopsis to Simultaneous Biotic and Abiotic Stresses

(2013) N. J. Atkinson et al.   PLANT PHYSIOLOGY

Comprehensive Genome-Wide Survey, Genomic Constitution and Expression Profiling of the NAC Transcription Factor Family in Foxtail Millet (Setaria italica L.)

(2013) Swati Puranik et al.   PLoS One

LegumeGRN: A Gene Regulatory Network Prediction Server for Functional and Comparative Studies

(2013) Mingyi Wang et al.   PLoS One

Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells

(2012) Mingzhu Zhu et al.   BMC GENOMICS

Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray

(2012) João Paulo Fabi et al.   BMC PLANT BIOLOGY

Identification of Gene Modules Associated with Drought Response in Rice by Network-Based Analysis

(2012) Lida Zhang et al.   PLoS One

PLEXdb: gene expression resources for plants and plant pathogens

(2011) S. Dash et al.   NUCLEIC ACIDS RESEARCH

A putative functional MYB transcription factor induced by low temperature regulates anthocyanin biosynthesis in purple kale (Brassica Oleracea var. acephala f. tricolor)

(2011) Bin Zhang et al.   PLANT CELL REPORTS

CoP: a database for characterizing co-expressed gene modules with biological information in plants

(2010) Y. Ogata et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Low temperature stress at different flower developmental stages affects pollen development, pollination, and pod set in soybean

(2010) Shizen Ohnishi et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Arabidopsis gene co-expression network and its functional modules

(2009) Linyong Mao et al.   BMC BIOINFORMATICS

Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa

(2009) Mark W Davey et al.   BMC GENOMICS

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Assembly of an Interactive Correlation Network for the Arabidopsis Genome Using a Novel Heuristic Clustering Algorithm

(2009) M. Mutwil et al.   PLANT PHYSIOLOGY

Heterologous microarray experiments allow the identification of the early events associated with potato tuber cold sweetening

(2008) Paolo Bagnaresi et al.   BMC GENOMICS

ATTED-II provides coexpressed gene networks for Arabidopsis

(2008) T. Obayashi et al.   NUCLEIC ACIDS RESEARCH

CressExpress: A Tool For Large-Scale Mining of Expression Data from Arabidopsis

(2008) V. Srinivasasainagendra et al.   PLANT PHYSIOLOGY

Low temperature stress in maize (Zea mays L.) induces genes involved in photosynthesis and signal transduction as studied by suppression subtractive hybridization

(2008) Ha Thuy Nguyen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY