Doubled Haploid ‘CUDH2107’ as a Reference for Bulb Onion (Allium cepa L.) Research: Development of a Transcriptome Catalogue and Identification of Transcripts Associated with Male Fertility

Molecular and regulatory mechanisms controlling floral organ development

(2016) Darragh Stewart et al.   FEBS Journal

Development of japonica Photo-Sensitive Genic Male Sterile Rice Lines by Editing Carbon Starved Anther Using CRISPR/Cas9

(2016) Quanlin Li et al.   Journal of Genetics and Genomics

Cytoplasmic male sterility (CMS) in hybrid breeding in field crops

(2016) Abhishek Bohra et al.   PLANT CELL REPORTS

OsDMC1 Is Not Required for Homologous Pairing in Rice Meiosis

(2016) Hongjun Wang et al.   PLANT PHYSIOLOGY

Transcriptomic Analysis of Differentially Expressed Genes during Flower Organ Development in Genetic Male Sterile and Male Fertile Tagetes erecta by Digital Gene-Expression Profiling

(2016) Ye Ai et al.   PLoS One

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.)

(2015) Rina Kamenetsky et al.   BMC GENOMICS

Anther and pollen development: A conserved developmental pathway

(2015) José Fernández Gómez et al.   Journal of Integrative Plant Biology

AnArabidopsisTranscriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors

(2015) Jinpu Jin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)

(2015) Hikaru Tsukazaki et al.   MOLECULAR BREEDING

Development of a novel recessive genetic male sterility system for hybrid seed production in maize and other cross-pollinating crops

(2015) Yongzhong Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

Enhancing onion breeding using molecular tools

(2015) Jiffinvir S. Khosa et al.   PLANT BREEDING

Targeted Mutagenesis, Precise Gene Editing, and Site-Specific Gene Insertion in Maize Using Cas9 and Guide RNA

(2015) Sergei Svitashev et al.   PLANT PHYSIOLOGY

Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa)

(2015) Li Zhang et al.   PLANT SCIENCE

Identification of candidate genes associated with fertility restoration of cytoplasmic male-sterility in onion (Allium cepa L.) using a combination of bulked segregant analysis and RNA-seq

(2015) Sunggil Kim et al.   THEORETICAL AND APPLIED GENETICS

A novel male sterility-fertility restoration system in plants for hybrid seed production

(2015) Surendra Pratap Singh et al.   Scientific Reports

A soybean MADS-box protein modulates floral organ numbers, petal identity and sterility

(2014) Fang Huang et al.   BMC PLANT BIOLOGY

Integrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.)

(2014) S. Kim et al.   DNA RESEARCH

A barley PHD finger transcription factor that confers male sterility by affecting tapetal development

(2014) José Fernández Gómez et al.   PLANT BIOTECHNOLOGY JOURNAL

De Novo Assembly of the Perennial Ryegrass Transcriptome Using an RNA-Seq Strategy

(2014) Jacqueline D. Farrell et al.   PLoS One

Ecological and evolutionary significance of genomic GC content diversity in monocots

(2014) Petr Šmarda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis

(2014) Sylvain Glémin et al.   TRENDS IN GENETICS

Dramatic improvement in genome assembly achieved using doubled-haploid genomes

(2014) Hong Zhang et al.   Scientific Reports

Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding

(2014) Rajeev K. Varshney et al.   PLOS BIOLOGY

Male Sterility and Fertility Restoration in Crops

(2013) Letian Chen et al.   Annual Review of Plant Biology

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Male-sterile maize plants produced by targeted mutagenesis of the cytochrome P450-like gene (MS26) using a re-designed I-CreI homing endonuclease

(2013) Vesna Djukanovic et al.   PLANT JOURNAL

Transcriptome sequencing to produce SNP-based genetic maps of onion

(2013) J. Duangjit et al.   THEORETICAL AND APPLIED GENETICS

Structure and function of florigen and the receptor complex

(2013) Ken-ichiro Taoka et al.   TRENDS IN PLANT SCIENCE

Evolution and function of MADS-box genes involved in orchid floral development

(2013) Wen-Chieh TSAI et al.   Journal of Systematics and Evolution

Gene, protein, and network of male sterility in rice

(2013) Kun Wang et al.   Frontiers in Plant Science

Catalyzing plant science research with RNA-seq

(2013) Laetitia B. B. Martin et al.   Frontiers in Plant Science

A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)

(2012) Samantha Baldwin et al.   BMC GENOMICS

Molecular Control of Male Reproductive Development and Pollen Fertility in RiceF

(2012) Jing-Xin Guo et al.   Journal of Integrative Plant Biology

De novo assembly and characterization of the garlic (Allium sativum) bud transcriptome by Illumina sequencing

(2012) Xiudong Sun et al.   PLANT CELL REPORTS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

OsAM1 is required for leptotene-zygotene transition in rice

(2011) Lixiao Che et al.   CELL RESEARCH

Flower development in rice

(2011) Hitoshi Yoshida et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Rice APOPTOSIS INHIBITOR5 Coupled with Two DEAD-Box Adenosine 5′-Triphosphate-Dependent RNA Helicases Regulates Tapetum Degeneration

(2011) Xingwang Li et al.   PLANT CELL

Pollen Semi-Sterility1Encodes a Kinesin-1–Like Protein Important for Male Meiosis, Anther Dehiscence, and Fertility in Rice

(2011) Shirong Zhou et al.   PLANT CELL

PERSISTENT TAPETAL CELL1 Encodes a PHD-Finger Protein That Is Required for Tapetal Cell Death and Pollen Development in Rice

(2011) H. Li et al.   PLANT PHYSIOLOGY

OsREC8 Is Essential for Chromatid Cohesion and Metaphase I Monopolar Orientation in Rice Meiosis

(2011) T. Shao et al.   PLANT PHYSIOLOGY

OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice

(2011) Xinqiang Gao et al.   PLANTA

The Gibberellin perception system evolved to regulate a pre-existing GAMYB-mediated system during land plant evolution

(2011) Koichiro Aya et al.   Nature Communications

Ectopic expression of TrPI, a Taihangia rupestris (Rosaceae) PI ortholog, causes modifications of vegetative architecture in Arabidopsis

(2010) Shanhua Lü et al.   JOURNAL OF PLANT PHYSIOLOGY

Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development

(2010) H. Zhang et al.   PLANT CELL

Distinct Regulation of Adaxial-Abaxial Polarity in Anther Patterning in Rice

(2010) T. Toriba et al.   PLANT CELL

The Central Element Protein ZEP1 of the Synaptonemal Complex Regulates the Number of Crossovers during Meiosis in Rice

(2010) M. Wang et al.   PLANT CELL

Cytochrome P450 Family Member CYP704B2 Catalyzes the   -Hydroxylation of Fatty Acids and Is Required for Anther Cutin Biosynthesis and Pollen Exine Formation in Rice

(2010) H. Li et al.   PLANT CELL

Arabidopsis Basic Leucine-Zipper Transcription Factors TGA9 and TGA10 Interact with Floral Glutaredoxins ROXY1 and ROXY2 and Are Redundantly Required for Anther Development

(2010) J. Murmu et al.   PLANT PHYSIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice

(2009) Ling Chang et al.   CELL RESEARCH

MOSAIC FLORAL ORGANS1, an AGL6-Like MADS Box Gene, Regulates Floral Organ Identity and Meristem Fate in Rice

(2009) S. Ohmori et al.   PLANT CELL

STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice

(2009) Han Xiao et al.   PLANT JOURNAL

Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)

(2009) Rongfeng Cui et al.   PLANT JOURNAL

Regulation of Arabidopsis Early Anther Development by the Mitogen-Activated Protein Kinases, MPK3 and MPK6, and the ERECTA and Related Receptor-Like Kinases

(2008) Carey L.H. Hord et al.   Molecular Plant

Unequal Genetic Redundancy of Rice PISTILLATA Orthologs, OsMADS2 and OsMADS4, in Lodicule and Stamen Development

(2008) S.-G. Yao et al.   PLANT AND CELL PHYSIOLOGY

OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers

(2008) Xinai Zhao et al.   PLANT JOURNAL