Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

(2016) Kai Xue et al.   Nature Climate Change

A time for every season: soil aggregate turnover stimulates decomposition and reduces carbon loss in grasslands managed for bioenergy

(2015) Elizabeth M. Bach et al.   Global Change Biology Bioenergy

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-Term Impact of Tillage Practices and Phosphorus Fertilization on Soil Phosphorus Forms as Determined by P Nuclear Magnetic Resonance Spectroscopy

(2014) Dalel Abdi et al.   JOURNAL OF ENVIRONMENTAL QUALITY

These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure

(2014) Qingpeng Zhang et al.   PLoS One

Tackling soil diversity with the assembly of large, complex metagenomes

(2014) Adina Chuang Howe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland

(2014) Antje Gittel et al.   Frontiers in Microbiology

Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics

(2013) Chengwei Luo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Soil aggregate isolation method affects measures of intra-aggregate extracellular enzyme activity

(2013) Elizabeth M. Bach et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phosphorus Speciation in Riparian Soils: A Phosphorus-31 Nuclear Magnetic Resonance Spectroscopy and Enzyme Hydrolysis Study

(2013) Eric O. Young et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Microbial carbohydrate esterases deacetylating plant polysaccharides

(2012) Peter Biely   BIOTECHNOLOGY ADVANCES

Spatial distribution of N-cycling microbial communities showed complex patterns in constructed wetland sediments

(2012) David Correa-Galeote et al.   FEMS MICROBIOLOGY ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

(2012) J. Pell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrating microbial ecology into ecosystem models: challenges and priorities

(2011) Kathleen K. Treseder et al.   BIOGEOCHEMISTRY

SOM genesis: microbial biomass as a significant source

(2011) Anja Miltner et al.   BIOGEOCHEMISTRY

Influence of land-use intensity on the spatial distribution of N-cycling microorganisms in grassland soils

(2011) Daniel Keil et al.   FEMS MICROBIOLOGY ECOLOGY

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Persistence of soil organic matter as an ecosystem property

(2011) Michael W. I. Schmidt et al.   NATURE

Overestimation of the importance of phytate in NaOH–EDTA soil extracts as assessed by 31P NMR analyses

(2011) Ashlea L. Doolette et al.   ORGANIC GEOCHEMISTRY

Forms and Lability of Phosphorus in Humic Acid Fractions of Hord Silt Loam Soil

(2011) Zhongqi He et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Bacterial Communities in the Rhizosphere of Biofuel Crops Grown on Marginal Lands as Evaluated by 16S rRNA Gene Pyrosequences

(2010) Ederson da C. Jesus et al.   BioEnergy Research

Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?

(2010) Sergio E. Morales et al.   FEMS MICROBIOLOGY ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE