Genome-wide characterization and evolution analysis of miniature inverted-repeat transposable elements (MITEs) in moso bamboo (Phyllostachys heterocycla)

Characterization of the Floral Transcriptome of Moso Bamboo (Phyllostachys edulis) at Different Flowering Developmental Stages by Transcriptome Sequencing and RNA-Seq Analysis

(2014) Jian Gao et al.   PLoS One

Small RNA Profile in Moso Bamboo Root and Leaf Obtained by High Definition Adapters

(2014) Ping Xu et al.   PLoS One

Discovery and Comparative Profiling of microRNAs in Representative Monopodial Bamboo (Phyllostachys edulis) and Sympodial Bamboo (Dendrocalamus latiflorus)

(2014) Hansheng Zhao et al.   PLoS One

BambooGDB: a bamboo genome database with functional annotation and an analysis platform

(2014) H. Zhao et al.   Database-The Journal of Biological Databases and Curation

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements

(2013) Guojun Yang   BMC BIOINFORMATICS

Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome

(2013) Perumal Sampath et al.   BMC PLANT BIOLOGY

Next-generation sequencing-based mRNA and microRNA expression profiling analysis revealed pathways involved in the rapid growth of developing culms in Moso bamboo

(2013) Cai-yun He et al.   BMC PLANT BIOLOGY

Miniature inverted-repeat transposable elements: discovery, distribution, and activity

(2013) Isam Fattash et al.   GENOME

The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)

(2013) Zhenhua Peng et al.   NATURE GENETICS

P-MITE: a database for plant miniature inverted-repeat transposable elements

(2013) Jiongjiong Chen et al.   NUCLEIC ACIDS RESEARCH

A Rice Stowaway MITE for Gene Transfer in Yeast

(2013) Isam Fattash et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

A Gaijin-like miniature inverted repeat transposable element is mobilized in rice during cell differentiation

(2012) Hai-Tao Dong et al.   BMC GENOMICS

Transposable-Element Associated Small RNAs in Bombyx mori Genome

(2012) Yimei Cai et al.   PLoS One

Transposable element small RNAs as regulators of gene expression

(2012) Andrea D. McCue et al.   TRENDS IN GENETICS

Mar, a MITE family of hAT transposons in Drosophila

(2012) Maríndia Deprá et al.   Mobile DNA

Miniature Inverted-Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa

(2011) C. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

(2011) J. D. Hollister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Burst expansion, distribution and diversification of MITEs in the silkworm genome

(2010) Min-Jin Han et al.   BMC GENOMICS

Small RNAs, DNA methylation and transposable elements in wheat

(2010) Dario Cantu et al.   BMC GENOMICS

Miniature Inverted-Repeat Transposable Elements of Stowaway Are Active in Potato

(2010) Masaki Momose et al.   GENETICS

Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression

(2009) J. D. Hollister et al.   GENOME RESEARCH

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome

(2009) Tatiana Zerjal et al.   PLANT MOLECULAR BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica

(2008) Nobuhiko Oki et al.   GENES & GENETIC SYSTEMS

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs

(2008) H. Kuang et al.   GENOME RESEARCH

Bombyx small RNAs: Genomic defense system against transposons in the silkworm, Bombyx mori

(2008) Shinpei Kawaoka et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY