Metabolomics in Agriculture

Classification of Rice Seed Storage Proteins using Neural Networks

(2013) Soma Marla et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

CoP: a database for characterizing co-expressed gene modules with biological information in plants

(2010) Y. Ogata et al.   BIOINFORMATICS

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

Genomics and Bioinformatics Resources for Crop Improvement

(2010) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Enhancement of Plant Metabolite Fingerprinting by Machine Learning

(2010) I. M. Scott et al.   PLANT PHYSIOLOGY

Gene Clusters for Secondary Metabolic Pathways: An Emerging Theme in Plant Biology

(2010) A. Osbourn   PLANT PHYSIOLOGY

hi2-1, A QTL which improves harvest index, earliness and alters metabolite accumulation of processing tomatoes

(2010) Amit Gur et al.   THEORETICAL AND APPLIED GENETICS

Genetic and molecular basis of fragrance in rice

(2009) K. Sakthivel et al.   BIOTECHNOLOGY ADVANCES

Correlation exploration of metabolic and genomic diversity in rice

(2009) Keiichi Mochida et al.   BMC GENOMICS

System-wide molecular evidence for phenotypic buffering in Arabidopsis

(2009) Jingyuan Fu et al.   NATURE GENETICS

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2009) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Advancing Genetic Theory and Application by Metabolic Quantitative Trait Loci Analysis

(2009) DanielJ. Kliebenstein   PLANT CELL

A Chloroplastic UDP-Glucose Pyrophosphorylase from Arabidopsis Is the Committed Enzyme for the First Step of Sulfolipid Biosynthesis

(2009) Y. Okazaki et al.   PLANT CELL

RiceArrayNet: A Database for Correlating Gene Expression from Transcriptome Profiling, and Its Application to the Analysis of Coexpressed Genes in Rice

(2009) T.-H. Lee et al.   PLANT PHYSIOLOGY

Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A

(2009) K. Maruyama et al.   PLANT PHYSIOLOGY

Transgenic multivitamin corn through biofortification of endosperm with three vitamins representing three distinct metabolic pathways

(2009) S. Naqvi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana

(2009) D. Bikard et al.   SCIENCE

Relationship between metabolic and genomic diversity in sesame (Sesamum indicum L.)

(2008) Hernán Laurentin et al.   BMC GENOMICS

Identification of gene for rice (Oryza sativa) seed lipoxygenase-3 involved in the generation of stale flavor and development of SNP markers for lipoxygenase-3 deficiency

(2008) Kenta Shirasawa et al.   BREEDING SCIENCE

ATTED-II provides coexpressed gene networks for Arabidopsis

(2008) T. Obayashi et al.   NUCLEIC ACIDS RESEARCH

BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009

(2008) A. Chang et al.   NUCLEIC ACIDS RESEARCH

Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome

(2008) H. C. Rowe et al.   PLANT CELL

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

Mode of Inheritance of Primary Metabolic Traits in Tomato

(2008) N. Schauer et al.   PLANT CELL

Metabolite annotations based on the integration of mass spectral information

(2008) Yoko Iijima et al.   PLANT JOURNAL

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics

(2008) Kaoru Urano et al.   PLANT JOURNAL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

The Genetic Basis of Constitutive and Herbivore-Induced ESP-Independent Nitrile Formation in Arabidopsis

(2008) M. Burow et al.   PLANT PHYSIOLOGY

Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli

(2008) K. Hanada et al.   PLANT PHYSIOLOGY

A Role for Gene Duplication and Natural Variation of Gene Expression in the Evolution of Metabolism

(2008) Daniel J. Kliebenstein   PLoS One

Natural Genetic Variation in Lycopene Epsilon Cyclase Tapped for Maize Biofortification

(2008) C. E. Harjes et al.   SCIENCE

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS

Rice Metabolomics

(2008) Akira Oikawa et al.   Rice

Genetic Networks Controlling Structural Outcome of Glucosinolate Activation across Development

(2008) Adam M. Wentzell et al.   PLoS Genetics

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE