4.2 Article

Doubled Haploids generated through anther culture from an elite long duration rice hybrid, CRHR32: Method optimization and molecular characterization

Journal

PLANT BIOTECHNOLOGY
Volume 33, Issue 3, Pages 177-186

Publisher

JAPANESE SOC PLANT CELL & MOLECULAR BIOLOGY
DOI: 10.5511/plantbiotechnology.16.0719a

Keywords

anther culture; doubled haploid; rice hybrid; segregation distortion; SSR

Ask authors/readers for more resources

An improved procedure has been developed for high frequency androgenesis in an elite long duration indica rice hybrid. The effects of cold temperature pretreatment, duration of treatment and media with different plant growth regulators on callus induction and shoot regeneration were examined for generation of doubled haploids. N6 medium supplemented with 2.0 mgl(-1) 2,4-D, 0.5 mgl(-1) BAP and 30 gl(-1) maltose was found to be most effective for callusing when compared with MS and SK1. The N6 media grown calli showed maximum green shoot regeneration frequency in MS medium supplemented with 0.5 mgl(-1) NAA, 0.5 mgl(-1) Kinetin, 1.5 mgl(-1) BAP and 30 gl(-1) sucrose after 2 week of culture. The cold temperature treatment of spike at 10 degrees C for 2 days alongside by 8 days was found to be most suitable conditions for callusing and green shoot regeneration producing 186 green plants from indica rice hybrid, CRHR32. The ploidy status assessed on the basis of morpho-agronomic characters revealed fertile diploids at a frequency of about 81.10%; 16.10%, 2.68% and 1.08% were polyploids, haploids and mixploids respectively. Microsatellite marker analysis showed 1 : 1 ratio of the alleles of CMS and restorer lines used for development of CRHR32. Homozygosity was detected for all the marker loci in 150 DHs and only one plant was identified as heterozygote. This investigation identified the favorable media composition and condition for callus induction and green plant regeneration which would further increase the knowledge and better understanding in rice hybrids for development of DHs.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.2
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Multidisciplinary Sciences

Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers

Manoj Kumar Yadav, S. Aravindan, Umakanta Ngangkham, S. Raghu, S. R. Prabhukarthikeyan, U. Keerthana, B. C. Marndi, Totan Adak, Susmita Munda, Rupesh Deshmukh, D. Pramesh, Sanghamitra Samantaray, P. C. Rath

PLOS ONE (2019)

Correction Multidisciplinary Sciences

Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers (vol 14, e0211061, 2019)

Manoj Kumar Yadav, S. Aravindan, Umakanta Ngangkham, S. Raghu, S. R. Prabhukarthikeyan, U. Keerthana, B. C. Marndi, Totan Adak, Susmita Munda, Rupesh Deshmukh, D. Pramesh, Sanghamitra Samantaray, P. C. Rath

PLOS ONE (2019)

Article Food Science & Technology

Low Light Stress Influences Resistant Starch Content and Glycemic Index of Rice (O. sativa L)

Awadhesh Kumar, Darshan Panda, Monalisha Biswal, Prajjal Dey, Lambodar Behera, Mirja Jaynul Baig, Lopamudra Nayak, Umakanta Ngangkham, Srigopal Sharma

STARCH-STARKE (2019)

Article Agronomy

Differential RNA Editing of Mitochondrial Genes in WA-Cytoplasmic Based Male Sterile Line Pusa 6A, and Its Maintainer and Restorer Lines

Umakanta Ngangkham, Swamp Kumar Parida, Ashok Kumar Singh, Trilochan Mohapatra

RICE SCIENCE (2019)

Article Biochemistry & Molecular Biology

Differential Expression of Genes at Panicle Initiation and Grain Filling Stages Implied in Heterosis of Rice Hybrids

Jawahar Lal Katara, Ram Lakhan Verma, Madhuchhanda Parida, Umakanta Ngangkham, Kutubuddin Ali Molla, Kalyani Makarand Barbadikar, Mitadru Mukherjee, C. Parameswaran, Sanghamitra Samantaray, Nageswara Rao Ravi, Onkar Nath Singh, Trilochan Mohapatra

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Food Science & Technology

Addition of Pulses, Cooking Oils, and Vegetables Enhances Resistant Starch and Lowers the Glycemic Index of Rice (Oryza sativa L.)

Awadhesh Kumar, Puja Archana Panda, Milan Kumar Lal, Umakanta Ngangkham, Chandrasekhar Sahu, Khela Ram Soren, Hata Nath Subudhi, Sanghamitra Samantaray, Srigopal Sharma

STARCH-STARKE (2020)

Article Agronomy

Effects of high temperature on spikelet sterility in rice (Oryza sativa L.): association between molecular markers and allelic phenotypic effect in field condition

Parameswaran Chidambaranathan, Cayalvizhi Balasubramaniasai, Niranjana Behura, Mohini Purty, Sanghamitra Samantaray, Hatanath Subudhi, Umakanta Ngangkham, B. N. Devanna, Jawahar Lal Katara, Awadhesh Kumar, Lambodar Behera

Summary: Rice varieties were evaluated for heat tolerance during the dry season, with 67 selected varieties validated in the second dry season. Some varieties showed good tolerance to heat stress, reducing spikelet sterility. The allelic phenotypic effect of favorable alleles played a crucial role in improving heat tolerance in rice varieties.

GENETIC RESOURCES AND CROP EVOLUTION (2021)

Article Biotechnology & Applied Microbiology

Morpho-molecular and mating-type locus diversity of Ustilaginoidea virens: an incitant of false smut of rice from Southern parts of India

H. Sharanabasav, D. Pramesh, M. K. Prasannakumar, E. Chidanandappa, M. K. Yadav, U. Ngangkham, B. Parivallal, B. T. Raghavendra, C. Manjunatha, S. K. Sharma, N. Karthik

Summary: The study characterized the geo-distinct isolates of Ustilaginoidea virens for morpho-molecular and mating-type locus diversity, revealing significant diversity among isolates from Southern India and distribution of heterothallic mating types in paddy fields. Complete synteny conservation between Indian and Chinese strains was observed at the MAT1 locus.

JOURNAL OF APPLIED MICROBIOLOGY (2021)

Article Biotechnology & Applied Microbiology

Morpho-molecular diversity and avirulence genes distribution among the diverse isolates of Magnaporthe oryzae from Southern India

Chittaragi Amoghavarsha, Devanna Pramesh, Ganesh R. Naik, Manjunath K. Naik, Manoj K. Yadav, Umakanta Ngangkham, Eranna Chidanandappa, Adke Raghunandana, Huded Sharanabasav, Siddepalli E. Manjunatha

Summary: The study investigated the diversity of eco-distinct isolates of Magnaporthe oryzae in southern India in terms of morphological, virulence, and molecular characteristics, as well as the distribution of five Avr genes. PCR analysis showed that Avr-Piz-t, Avr-Pik, and Avr-Pia were predominant among the isolates. The research provides valuable information for plant breeders to develop blast disease-resistant rice cultivars.

JOURNAL OF APPLIED MICROBIOLOGY (2022)

Article Biochemistry & Molecular Biology

A single nucleotide substitution in the SPDT transporter gene reduced phytic acid and increased mineral bioavailability from Rice grain (Oryza sativa L.)

Awadhesh Kumar, Sarangadhar Nayak, Umakanta Ngangkham, Rameswar Prasad Sah, Milan Kumar Lal, T. P. Azharudheen, Sasmita Behera, Padmini Swain, Lambodar Behera, Srigopal Sharma

Summary: The flow of phosphorus in agricultural land is influenced by various factors, with phytic acid being the main storage form of phosphorus in rice grains. Genetic variations can affect the accumulation of phosphorus and phytic acid in grains, ultimately impacting mineral bioavailability.

JOURNAL OF FOOD BIOCHEMISTRY (2021)

Article Biotechnology & Applied Microbiology

Multilocus sequence analysis and identification of mating-type idiomorphs distribution in Magnaporthe oryzae population of Karnataka state of India

Amoghavarsha Chittaragi, Devanna Pramesh, Ganesha R. Naik, Manjunath K. Naik, Manoj K. Yadav, Umakanta Ngangkham, Manjunatha E. Siddepalli, Anusha Nayak, Muthukapalli K. Prasannakumar, Chidanandappa Eranna

Summary: This study investigates the genetic diversity, population structure, and mating-type distribution of Magnaporthe oryzae isolates associated with leaf blast disease of rice in Karnataka, India. The results reveal a genetically homogenous population of M. oryzae with two mating types. The study highlights the importance of understanding the population structure and sexual mating behavior of M. oryzae for developing region-specific blast-resistant rice cultivars.

JOURNAL OF APPLIED MICROBIOLOGY (2022)

Article Plant Sciences

Identification of genomic regions for salinity tolerance at germination stage of rice using doubled haploid mapping population

Umakanta Ngangkham, Sonali Nanda, Jawahar Lal Katara, Sanghamitra Samantaray

Summary: Seed germination in rice is highly sensitive to salinity stress, with significant variation observed in tolerant and susceptible lines. Through a study using 117 DH lines, genomic regions linked to salt tolerance during germination were identified from the candidate genes. Further research is recommended to explore the mechanisms of salinity tolerance during seed germination in rice.

INDIAN JOURNAL OF GENETICS AND PLANT BREEDING (2021)

Article Biotechnology & Applied Microbiology

Identification and characterization of polymorphic genic SSR markers between cultivated (Oryza sativa) and Indian wild rice (Oryza nivara)

Umakanta Ngangkham, Jawahar Lal Katara, P. S. Shanmugavadivel, Manoj Kumar Yadav, Suresh Yadav, Nongthombam Devachandra, Sanghamitra Samantaray, Lotan Kumar Bose

INDIAN JOURNAL OF BIOTECHNOLOGY (2020)

Article Plant Sciences

A multiplex PCR system for testing the genetic purity of hybrid rice (Oryza sativa L.)

Madhuchhanda Parida, Umakanta Ngangkham, Jawahar Lal Katara, Manoj Kumar Yadav, Sanghamitra Samantaray, Trilochan Mohapatra

INDIAN JOURNAL OF GENETICS AND PLANT BREEDING (2020)

Article Multidisciplinary Sciences

Detection of stable QTLs for grain protein content in rice (Oryza sativa L.) employing high throughput phenotyping and genotyping platforms

Krishnendu Chattopadhyay, Lambodar Behera, Torit Baran Bagchi, Sushree Sibanee Sardar, Nutan Moharana, Niraja Rani Patra, Mridul Chakraborti, Avijit Das, Bishnu Charan Marndi, Ananta Sarkar, Umakanta Ngangkham, Koushik Chakraborty, Lotan Kumar Bose, Sutapa Sarkar, Soham Ray, Srigopal Sharma

SCIENTIFIC REPORTS (2019)

No Data Available