Insights into thePrunus-Specific S-RNase-Based Self-Incompatibility System from a Genome-Wide Analysis of the Evolutionary Radiation ofSLocus-Related F-box Genes

Distinct Self-recognition in the Prunus S-RNase-based Gametophytic Self-incompatibility System

(2016) Daiki Matsumoto et al.   Horticulture Journal

Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia

(2015) Ken-ichi Kubo et al.   Nature Plants

Convergent Evolution at the Gametophytic Self-Incompatibility System in Malus and Prunus

(2015) Bruno Aguiar et al.   PLoS One

The Microtubule Cytoskeleton and Pollen Tube Golgi Vesicle System are Required for in Vitro S-RNase Internalization and Gametic Self-Incompatibility in Apple

(2014) Dong Meng et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome Analysis Reveals the Same 17S-Locus F-BoxGenes in Two Haplotypes of the Self-Incompatibility Locus ofPetunia inflata

(2014) Justin S. Williams et al.   PLANT CELL

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

A normalization strategy for comparing tag count data

(2012) Koji Kadota et al.   Algorithms for Molecular Biology

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The fate of duplicated genes in a polyploid plant genome

(2012) Anne Roulin et al.   PLANT JOURNAL

Identification of a Skp1-Like Protein Interacting with SFB, the Pollen S Determinant of the Gametophytic Self-Incompatibility in Prunus

(2012) D. Matsumoto et al.   PLANT PHYSIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence divergence and loss-of-function phenotypes of S locus F-box brothers genes are consistent with non-self recognition by multiple pollen determinants in self-incompatibility of Japanese pear (Pyrus pyrifolia)

(2011) Hiroyuki Kakui et al.   PLANT JOURNAL

Expression and Trans-Specific Polymorphism of Self-Incompatibility RNases in Coffea (Rubiaceae)

(2011) Michael D. Nowak et al.   PLoS One

S-RNase-based self-incompatibility in Petunia inflata

(2010) Xiaoying Meng et al.   ANNALS OF BOTANY

Related polymorphic F-box protein genes between haplotypes clustering in the BAC contig sequences around the S-RNase of Japanese pear

(2010) Kazuma Okada et al.   JOURNAL OF EXPERIMENTAL BOTANY

Dramatic Change in Function and Expression Pattern of a Gene Duplicated by Polyploidy Created a Paternal Effect Gene in the Brassicaceae

(2010) S.-L. Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus

(2010) Richard J. A. Buggs et al.   NEW PHYTOLOGIST

Collaborative Non-Self Recognition System in S-RNase-Based Self-Incompatibility

(2010) K.-i. Kubo et al.   SCIENCE

The S-RNase-based gametophytic self-incompatibility system in Prunus exhibits distinct genetic and molecular features

(2010) Ryutaro Tao et al.   SCIENTIA HORTICULTURAE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

(2009)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Genetic evidence that two independent S-loci control RNase-based self-incompatibility in diploid strawberry

(2009) R. I. Boskovic et al.   JOURNAL OF EXPERIMENTAL BOTANY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene duplication and evolutionary novelty in plants

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification

(2009) Guixia Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pollen-expressed F-box gene family and mechanism of S-RNase-based gametophytic self-incompatibility (GSI) in Rosaceae

(2009) Hidenori Sassa et al.   SEXUAL PLANT REPRODUCTION

An S-RNase-Based Gametophytic Self-Incompatibility System Evolved Only Once in Eudicots

(2008) Jorge Vieira et al.   JOURNAL OF MOLECULAR EVOLUTION

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS

RNase-Based Self-Incompatibility: Puzzled by Pollen S

(2008) E. Newbigin et al.   PLANT CELL

The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants

(2008) X. Yang et al.   PLANT PHYSIOLOGY

Characterization of SLFL1, a pollen-expressed F-box gene located in the Prunus S locus

(2008) Daiki Matsumoto et al.   SEXUAL PLANT REPRODUCTION