Protein turnover measurement using selected reaction monitoring-mass spectrometry (SRM-MS)

RePLiCal: A QconCAT Protein for Retention Time Standardization in Proteomics Studies

(2016) Stephen W. Holman et al.   JOURNAL OF PROTEOME RESEARCH

Direct and Absolute Quantification of over 1800 Yeast Proteins via Selected Reaction Monitoring

(2016) Craig Lawless et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteome Dynamics: Tissue Variation in the Kinetics of Proteostasis in Intact Animals

(2016) Dean E. Hammond et al.   MOLECULAR & CELLULAR PROTEOMICS

Label-free quantification in ion mobility–enhanced data-independent acquisition proteomics

(2016) Ute Distler et al.   Nature Protocols

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

(2016) James C. Williamson et al.   PROTEOMICS

Absolute protein quantification of the yeast chaperome under conditions of heat shock

(2016) Rebecca J. Mackenzie et al.   PROTEOMICS

Quantitative analysis of low-abundance serological proteins with peptide affinity-based enrichment and pseudo-multiple reaction monitoring by hybrid quadrupole time-of-flight mass spectrometry

(2015) Kwang Hoe Kim et al.   ANALYTICA CHIMICA ACTA

Label-Free (XIC) Quantification of Venom Procoagulant and Neurotoxin Expression in Related Australian Elapid Snakes Gives Insight into Venom Toxicity Evolution

(2015) Jure Skejic et al.   JOURNAL OF PROTEOME RESEARCH

Longitudinal Urinary Protein Variability in Participants of the Space Flight Simulation Program

(2015) Nina A. Khristenko et al.   JOURNAL OF PROTEOME RESEARCH

MS1-Based Label-Free Proteomics Using a Quadrupole Orbitrap Mass Spectrometer

(2015) Tali Shalit et al.   JOURNAL OF PROTEOME RESEARCH

Quantitation of 47 human tear proteins using high resolution multiple reaction monitoring (HR-MRM) based-mass spectrometry

(2015) Louis Tong et al.   Journal of Proteomics

Quantitative Profiling of Protein Tyrosine Kinases in Human Cancer Cell Lines by Multiplexed Parallel Reaction Monitoring Assays

(2015) Hye-Jung Kim et al.   MOLECULAR & CELLULAR PROTEOMICS

The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics

(2015) Scarlet Beck et al.   MOLECULAR & CELLULAR PROTEOMICS

Reproducible and Consistent Quantification of theSaccharomyces cerevisiaeProteome by SWATH-mass spectrometry

(2015) Nathalie Selevsek et al.   MOLECULAR & CELLULAR PROTEOMICS

Protein degradation corrects for imbalanced subunit stoichiometry in OST complex assembly

(2015) Susanne Mueller et al.   MOLECULAR BIOLOGY OF THE CELL

Studying macromolecular complex stoichiometries by peptide-based mass spectrometry

(2015) Ingo Wohlgemuth et al.   PROTEOMICS

SWATH enables precise label-free quantification on proteome scale

(2015) Qiang Huang et al.   PROTEOMICS

Stable Isotope Labeling by Amino acidin Vivo(SILAV): a new method to explore protein metabolism

(2015) Sylvain Lehmann et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Assessment of Serum Protein Dynamics by Native SILAC Flooding (SILflood)

(2014) Hendrik Nolte et al.   ANALYTICAL CHEMISTRY

Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass Spectrometer

(2014) Christian D. Kelstrup et al.   JOURNAL OF PROTEOME RESEARCH

Targeted Proteomic Quantitation of the Absolute Expression and Turnover of Cystic Fibrosis Transmembrane Conductance Regulator in the Apical Plasma Membrane

(2014) Adam J. McShane et al.   JOURNAL OF PROTEOME RESEARCH

Label-Free Quantitative Proteomics Reveals the Dynamics of Proteasome Complexes Composition and Stoichiometry in a Wide Range of Human Cell Lines

(2014) Bertrand Fabre et al.   JOURNAL OF PROTEOME RESEARCH

Protein turnover forms one of the highest maintenance costs in Lactococcus lactis

(2014) P.-J. Lahtvee et al.   MICROBIOLOGY-SGM

Ion Mobility Tandem Mass Spectrometry Enhances Performance of Bottom-up Proteomics

(2014) Dominic Helm et al.   MOLECULAR & CELLULAR PROTEOMICS

The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer

(2014) Richard Alexander Scheltema et al.   MOLECULAR & CELLULAR PROTEOMICS

Global Proteome Turnover Analyses of the Yeasts S. cerevisiae and S. pombe

(2014) Romain Christiano et al.   Cell Reports

Assessment of cardiac proteome dynamics with heavy water: slower protein synthesis rates in interfibrillar than subsarcolemmal mitochondria

(2013) Takhar Kasumov et al.   AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY

Protein Analysis by Shotgun/Bottom-up Proteomics

(2013) Yaoyang Zhang et al.   CHEMICAL REVIEWS

The One Hour Yeast Proteome

(2013) Alexander S. Hebert et al.   MOLECULAR & CELLULAR PROTEOMICS

Maximizing Peptide Identification Events in Proteomic Workflows Using Data-Dependent Acquisition (DDA)

(2013) Nicholas W. Bateman et al.   MOLECULAR & CELLULAR PROTEOMICS

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

(2013) Paola Picotti et al.   NATURE

Quantitative analysis of chaperone network throughput in budding yeast

(2013) Philip Brownridge et al.   PROTEOMICS

A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome

(2012) Michael S. Bereman et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

(2012) Marcus Bantscheff et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Measurement of Fractional Synthetic Rates of Multiple Protein Analytes by Triple Quadrupole Mass Spectrometry

(2012) A. Y. H. Lee et al.   CLINICAL CHEMISTRY

Proteome Dynamics: Revisiting Turnover with a Global Perspective

(2012) Amy J. Claydon et al.   MOLECULAR & CELLULAR PROTEOMICS

Global Subcellular Characterization of Protein Degradation Using Quantitative Proteomics

(2012) Mark Larance et al.   MOLECULAR & CELLULAR PROTEOMICS

Metabolic Labeling Reveals Proteome Dynamics of Mouse Mitochondria

(2012) Tae-Young Kim et al.   MOLECULAR & CELLULAR PROTEOMICS

PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life

(2012) M. Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted Proteomic Quantification on Quadrupole-Orbitrap Mass Spectrometer

(2012) Sebastien Gallien et al.   MOLECULAR & CELLULAR PROTEOMICS

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline

(2012) Birgit Schilling et al.   MOLECULAR & CELLULAR PROTEOMICS

Protein turnover: Measurement of proteome dynamics by whole animal metabolic labelling with stable isotope labelled amino acids

(2012) Amy J. Claydon et al.   PROTEOMICS

The use of selected reaction monitoring in quantitative proteomics

(2012) Stephen W Holman et al.   Bioanalysis

Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)

(2011) Genna L. Andrews et al.   ANALYTICAL CHEMISTRY

The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae

(2011) Andreas O. Helbig et al.   Molecular BioSystems

Quantification of mRNA and protein and integration with protein turnover in a bacterium

(2011) T. Maier et al.   Molecular Systems Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy

(2011) Philip Brownridge et al.   PROTEOMICS

Measurement of Human Surfactant Protein-B Turnover in Vivo from Tracheal Aspirates Using Targeted Proteomics

(2010) Daniela M. Tomazela et al.   ANALYTICAL CHEMISTRY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Global analysis of cellular protein translation by pulsed SILAC

(2008) Björn Schwanhäusser et al.   PROTEOMICS