Far-Red Emitting Fluorescent Dyes for Optical Nanoscopy: Fluorinated Silicon-Rhodamines (SiRF Dyes) and Phosphorylated Oxazines

Silicon-substituted xanthene dyes and their applications in bioimaging

(2015) Yu Kushida et al.   ANALYST

Highly Fluorescent and Water-Soluble Diketopyrrolopyrrole Dyes for Bioconjugation

(2015) Elodie Heyer et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A general method to improve fluorophores for live-cell and single-molecule microscopy

(2015) Jonathan B Grimm et al.   NATURE METHODS

STED Nanoscopy Reveals the Ubiquity of Subcortical Cytoskeleton Periodicity in Living Neurons

(2015) Elisa D’Este et al.   Cell Reports

A STED MICROSCOPE DESIGNED FOR ROUTINE BIOMEDICAL APPLICATIONS (Invited Paper)

(2015) Frederik Gorlitz et al.   Progress in Electromagnetics Research-PIER

Bright Building Blocks for Chemical Biology

(2014) Luke D. Lavis et al.   ACS Chemical Biology

New Trends in Near-Infrared Fluorophores for Bioimaging

(2014) Keitaro UMEZAWA et al.   ANALYTICAL SCIENCES

Phosphonated Near-Infrared Fluorophores for Biomedical Imaging of Bone

(2014) Hoon Hyun et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Super-resolution Microscopy Approaches for Live Cell Imaging

(2014) Antoine G. Godin et al.   BIOPHYSICAL JOURNAL

Red Si–rhodamine drug conjugates enable imaging in GFP cells

(2014) Eunha Kim et al.   CHEMICAL COMMUNICATIONS

A general approach to spirolactonized Si-rhodamines

(2014) Baogang Wang et al.   CHEMICAL COMMUNICATIONS

Straightforward Access to Water-Soluble Unsymmetrical Sulfoxanthene Dyes: Application to the Preparation of Far-Red Fluorescent Dyes with Large Stokes’ Shifts

(2014) Arnaud Chevalier et al.   CHEMISTRY-A EUROPEAN JOURNAL

Masked Rhodamine Dyes of Five Principal Colors Revealed by Photolysis of a 2-Diazo-1-Indanone Caging Group: Synthesis, Photophysics, and Light Microscopy Applications

(2014) Vladimir N. Belov et al.   CHEMISTRY-A EUROPEAN JOURNAL

Rapid Synthesis of Unsymmetrical Sulforhodamines Through Nucleophilic Amination of a Monobrominated Sulfoxanthene Dye

(2014) Arnaud Chevalier et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Functionalization of themeso-Phenyl Ring of Rhodamine Dyes Through SNAr with Sulfur Nucleophiles: Synthesis, Biophysical Characterizations, and Comprehensive NMR Analysis

(2014) Gyuzel Yu. Mitronova et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Twinkle, twinkle little star: Photoswitchable fluorophores for super-resolution imaging

(2014) Tyler J. Chozinski et al.   FEBS LETTERS

Small-Molecule Fluorophores with Large Stokes Shifts: 9-Iminopyronin Analogues as Clickable Tags

(2014) Peter Horváth et al.   JOURNAL OF ORGANIC CHEMISTRY

Near-Infrared Fluorescent 9-Phenylethynylpyronin Analogues for Bioimaging

(2014) Tomáš Pastierik et al.   JOURNAL OF ORGANIC CHEMISTRY

Fluorogenic probes for live-cell imaging of the cytoskeleton

(2014) Gražvydas Lukinavičius et al.   NATURE METHODS

Azo-Sulforhodamine Dyes: A Novel Class of Broad Spectrum Dark Quenchers

(2014) Arnaud Chevalier et al.   ORGANIC LETTERS

Imaging bacterial peptidoglycan with near-infrared fluorogenic azide probes

(2014) P. Shieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How to switch a fluorophore: from undesired blinking to controlled photoswitching

(2013) Sebastian van de Linde et al.   CHEMICAL SOCIETY REVIEWS

Photophysical processes in single molecule organic fluorescent probes

(2013) Elana M. S. Stennett et al.   CHEMICAL SOCIETY REVIEWS

Polar Red-Emitting Rhodamine Dyes with Reactive Groups: Synthesis, Photophysical Properties, and Two-Color STED Nanoscopy Applications

(2013) Kirill Kolmakov et al.   CHEMISTRY-A EUROPEAN JOURNAL

4-Trifluoromethyl-Substituted Coumarins with Large Stokes Shifts: Synthesis, Bioconjugates, and Their Use in Super-Resolution Fluorescence Microscopy

(2013) Heiko Schill et al.   CHEMISTRY-A EUROPEAN JOURNAL

A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins

(2013) Gražvydas Lukinavičius et al.   Nature Chemistry

The first comparative study of the ability of different hydrophilic groups to water-solubilise fluorescent BODIPY dyes

(2013) Anthony Romieu et al.   NEW JOURNAL OF CHEMISTRY

A Common Diaryl Ether Intermediate for the Gram-Scale Synthesis of Oxazine and Xanthene Fluorophores

(2012) Andrew V. Anzalone et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Triple-Color Super-Resolution Imaging of Live Cells: Resolving Submicroscopic Receptor Organization in the Plasma Membrane

(2012) Stephan Wilmes et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Spirolactonized Si-rhodamine: a novel NIR fluorophore utilized as a platform to construct Si-rhodamine-based probes

(2012) Ting Wang et al.   CHEMICAL COMMUNICATIONS

Red-Emitting Rhodamines with Hydroxylated, Sulfonated, and Phosphorylated Dye Residues and Their Use in Fluorescence Nanoscopy

(2012) Kirill Kolmakov et al.   CHEMISTRY-A EUROPEAN JOURNAL

Phosphorylated 3-Heteroarylcoumarins and Their Use in Fluorescence Microscopy and Nanoscopy

(2012) Shamil Nizamov et al.   CHEMISTRY-A EUROPEAN JOURNAL

Ortho-Functionalized Perylenediimides for Highly Fluorescent Water-Soluble Dyes

(2012) Glauco Battagliarin et al.   CHEMPHYSCHEM

A Trifluoroacetic Acid-labile Sulfonate Protecting Group and Its Use in the Synthesis of a Near-IR Fluorophore

(2012) Steven M. Pauff et al.   JOURNAL OF ORGANIC CHEMISTRY

Field Effects Induce Bathochromic Shifts in Xanthene Dyes

(2012) Martha Sibrian-Vazquez et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Development of NIR Fluorescent Dyes Based on Si–rhodamine for in Vivo Imaging

(2012) Yuichiro Koide et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

New insights into the water-solubilisation of fluorophores by post-synthetic “click” and Sonogashira reactions

(2012) Cédrik Massif et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Masked red-emitting carbopyronine dyes with photosensitive 2-diazo-1-indanone caging group

(2012) Kirill Kolmakov et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Evolution of Group 14 Rhodamines as Platforms for Near-Infrared Fluorescence Probes Utilizing Photoinduced Electron Transfer

(2011) Yuichiro Koide et al.   ACS Chemical Biology

Activatable Optical Imaging with a Silica-Rhodamine Based Near Infrared (SiR700) Fluorophore: A comparison with cyanine based dyes

(2011) Thomas E. McCann et al.   BIOCONJUGATE CHEMISTRY

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

(2011) Graham T Dempsey et al.   NATURE METHODS

Synthesis of Near-IR Fluorescent Oxazine Dyes with Esterase-Labile Sulfonate Esters

(2011) Steven M. Pauff et al.   ORGANIC LETTERS

Water-Soluble Phosphonate-Substituted BODIPY Derivatives with Tunable Emission Channels

(2011) Thomas Bura et al.   ORGANIC LETTERS

Superresolution Imaging using Single-Molecule Localization

(2010) George Patterson et al.   Annual Review of Physical Chemistry

Rational design, synthesis, and characterization of highly fluorescent optical switches for high-contrast optical lock-in detection (OLID) imaging microscopy in living cells

(2010) Chutima Petchprayoon et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Live-Cell Imaging with Water-Soluble Aminophenoxazinone Dyes Synthesised through Laccase Biocatalysis

(2010) Frédéric Bruyneel et al.   CHEMBIOCHEM

A Versatile Route to Red-Emitting Carbopyronine Dyes for Optical Microscopy and Nanoscopy

(2010) Kirill Kolmakov et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Simultaneous Fluorescent Monitoring of Proteasomal Subunit Catalysis

(2010) Aya Wakata et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Water solubilization of xanthene dyes by post-synthetic sulfonation in organic media

(2010) Anthony Romieu et al.   TETRAHEDRON LETTERS

Synthesis and applications of Rhodamine derivatives as fluorescent probes

(2009) Mariana Beija et al.   CHEMICAL SOCIETY REVIEWS

Red-Emitting Rhodamine Dyes for Fluorescence Microscopy and Nanoscopy

(2009) Kirill Kolmakov et al.   CHEMISTRY-A EUROPEAN JOURNAL

Caught in the act: quantifying protein behaviour in living cells

(2009) Diane S. Lidke et al.   TRENDS IN CELL BIOLOGY

A design concept of long-wavelength fluorescent analogs of rhodamine dyes: replacement of oxygen with silicon atom

(2008) Meiyan Fu et al.   CHEMICAL COMMUNICATIONS

Fluorescent Labeling of Biomolecules with Organic Probes

(2008) M. Sameiro T. Gonçalves   CHEMICAL REVIEWS

Fluorescence nanoscopy by ground-state depletion and single-molecule return

(2008) Jonas Fölling et al.   NATURE METHODS

Fluorescent probes for super-resolution imaging in living cells

(2008) Marta Fernández-Suárez et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Photostable, Amino Reactive and Water-Soluble Fluorescent Labels Based on Sulfonated Rhodamine with a Rigidized Xanthene Fragment

(2007) Vadim P. Boyarskiy et al.   CHEMISTRY-A EUROPEAN JOURNAL