Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices

Morphological Phylogenetics in the Genomic Age

(2015) Michael S.Y. Lee et al.   CURRENT BIOLOGY

No substitute for real data: A cautionary note on the use of phylogenies from birth-death polytomy resolvers for downstream comparative analyses

(2015) Daniel L. Rabosky   EVOLUTION

Simple versus complex models of trait evolution and stasis as a response to environmental change

(2015) Gene Hunt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A specimen-level phylogenetic analysis and taxonomic revision of Diplodocidae (Dinosauria, Sauropoda)

(2015) Emanuel Tschopp et al.   PeerJ

The affinities of the cosmopolitan arthropodIsoxysand its implications for the origin of arthropods

(2015) David A. Legg et al.   LETHAIA

Hallucigenia’s onychophoran-like claws and the case for Tactopoda

(2014) Martin R. Smith et al.   NATURE

Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data

(2014) April M. Wright et al.   PLoS One

Trigonotarbus johnsoni Pocock, 1911, revealed by X-ray computed tomography, with a cladistic analysis of the extinct trigonotarbid arachnids

(2014) Fiona M. Jones et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Three-dimensional reconstruction and the phylogeny of extinct chelicerate orders

(2014) Russell J. Garwood et al.   PeerJ

Gain of palps within a lineage of ancestrally burrowing annelids (Scalibregmatidae)

(2013) Alejandro Martínez et al.   ACTA ZOOLOGICA

Extended implied weighting

(2013) Pablo A. Goloboff   CLADISTICS

Parsimony analysis of endemicity (PAE) revisited

(2013) Juan J. Morrone   JOURNAL OF BIOGEOGRAPHY

Multi-Segmented Arthropods from the Middle Cambrian of British Columbia (Canada)

(2013) David Legg   JOURNAL OF PALEONTOLOGY

Archaeopteryx, paravian phylogenetic analyses, and the use of probability-based methods for palaeontological datasets

(2013) Xing Xu et al.   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

New Middle Cambrian bivalved arthropods from the Burgess Shale (British Columbia, Canada)

(2013) David A. Legg et al.   PALAEONTOLOGY

Clades reach highest morphological disparity early in their evolution

(2013) Martin Hughes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arthropod fossil data increase congruence of morphological and molecular phylogenies

(2013) David A. Legg et al.   Nature Communications

Assembling the Squamate Tree of Life: Perspectives from the Phenotype and the Fossil Record

(2012) Jacques A. Gauthier et al.   Bulletin of the Peabody Museum of Natural History

Phylogenetic relationships ofPaleotetra, a new characiform fish (Ostariophysi) with two new species from the Eocene-Oligocene of south-eastern Brazil

(2012) Fernanda E. Weiss et al.   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

An almost complete skeleton of a new Mesotheriidae (Notoungulata) from the Late Miocene of Casira, Bolivia

(2012) Esperanza Cerdeño et al.   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

Evolutionary mode routinely varies among morphological traits within fossil species lineages

(2012) M. J. Hopkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cambrian bivalved arthropod reveals origin of arthrodization

(2012) D. A. Legg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modelling rate distributions using character compatibility: implications for morphological evolution among fossil invertebrates

(2011) P. J. Wagner   Biology Letters

Likelihood reinstates Archaeopteryx as a primitive bird

(2011) M. S. Y. Lee et al.   Biology Letters

Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

(2011) Masanori Nakatani et al.   BMC EVOLUTIONARY BIOLOGY

Biologically Inspired Phylogenetic Models Strongly Outperform the No Common Mechanism Model

(2011) John P. Huelsenbeck et al.   SYSTEMATIC BIOLOGY

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

(2011) John J. Wiens et al.   SYSTEMATIC BIOLOGY

Phylogeny and taxonomic revision of Heteropachylinae (Opiliones: Laniatores: Gonyleptidae)

(2011) AMANDA CRUZ MENDES   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogenetic and biogeographic analysis of deiphonine trilobites

(2010) Curtis R. Congreve et al.   JOURNAL OF PALEONTOLOGY

The Akaike Information Criterion Will Not Choose the No Common Mechanism Model

(2010) Mark T. Holder et al.   SYSTEMATIC BIOLOGY

Palaeomorphology: fossils and the inference of cladistic relationships

(2009) Gregory D. Edgecombe   ACTA ZOOLOGICA

Arthropod phylogeny revisited, with a focus on crustacean relationships

(2009) Stefan Koenemann et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

Weighted parsimony phylogeny of the family Characidae (Teleostei: Characiformes)

(2009) J. Marcos Mirande   CLADISTICS

Weighting against homoplasy improves phylogenetic analysis of morphological data sets

(2008) Pablo A. Goloboff et al.   CLADISTICS

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

A Molecular Footprint of Limb Loss: Sequence Variation of the Autopodial Identity Gene Hoxa-13

(2008) Tiana Kohlsdorf et al.   JOURNAL OF MOLECULAR EVOLUTION

Reversing opinions on Dollo’s Law

(2008) Rachel Collin et al.   TRENDS IN ECOLOGY & EVOLUTION