Comprehensive comparison of large-scale tissue expression datasets

DISEASES: Text mining and data integration of disease–gene associations

(2015) Sune Pletscher-Frankild et al.   METHODS

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Analyzing the First Drafts of the Human Proteome

(2014) Iakes Ezkurdia et al.   JOURNAL OF PROTEOME RESEARCH

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

(2014) J. X. Binder et al.   Database-The Journal of Biological Databases and Curation

System wide analyses have underestimated protein abundances and the importance of transcription in mammals

(2014) Jingyi Jessica Li et al.   PeerJ

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology

(2013) Daniela Börnigen et al.   NUCLEIC ACIDS RESEARCH

Activities at the Universal Protein Resource (UniProt)

(2013)   NUCLEIC ACIDS RESEARCH

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text

(2013) Evangelos Pafilis et al.   PLoS One

In-depth mass spectrometric mapping of the human vitreous proteome

(2013) Sebastian Aretz et al.   Proteome Science

Human housekeeping genes, revisited

(2013) Eli Eisenberg et al.   TRENDS IN GENETICS

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions

(2013) Martin H. Schaefer et al.   PLoS Computational Biology

Mass Spectrometry-Based Proteomics in Molecular Diagnostics: Discovery of Cancer Biomarkers Using Tissue Culture

(2013) Debasish Paul et al.   Biomed Research International

RNA-Seq Atlas—a reference database for gene expression profiling in normal tissue by next-generation sequencing

(2012) Markus Krupp et al.   BIOINFORMATICS

BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA

(2012) Ida Schomburg et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues

(2012) Alicia Lundby et al.   Nature Communications

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

(2012) K. Van Auken et al.   Database-The Journal of Biological Databases and Curation

Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks

(2012) Oded Magger et al.   PLoS Computational Biology

Production of Tissue Microarrays, Immunohistochemistry Staining and Digitalization Within the Human Protein Atlas

(2012) Caroline Kampf et al.   Jove-Journal of Visualized Experiments

Tissue-Specific Proteins and Functional Implications

(2011) Dorothea Emig et al.   JOURNAL OF PROTEOME RESEARCH

VeryGene: linking tissue-specific genes to diseases, drugs, and beyond for knowledge discovery

(2011) Xiaoqin Yang et al.   PHYSIOLOGICAL GENOMICS

Identification of Human Housekeeping Genes and Tissue-Selective Genes by Microarray Meta-Analysis

(2011) Cheng-Wei Chang et al.   PLoS One

Non-specific binding of antibodies in immunohistochemistry: fallacies and facts

(2011) Igor Buchwalow et al.   Scientific Reports

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Tissue specificity and the human protein interaction network

(2009) Alice Bossi et al.   Molecular Systems Biology

A global view of protein expression in human cells, tissues, and organs

(2009) Fredrik Pontén et al.   Molecular Systems Biology

Gene Expression Atlas at the European Bioinformatics Institute

(2009) Misha Kapushesky et al.   NUCLEIC ACIDS RESEARCH

TissueDistributionDBs: a repository of organism-specific tissue-distribution profiles

(2009) Sunitha Kogenaru et al.   THEORETICAL CHEMISTRY ACCOUNTS

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

(2009) Chunlei Wu et al.   GENOME BIOLOGY

Exon level integration of proteomics and microarray data

(2008) Danny A Bitton et al.   BMC BIOINFORMATICS

TiGER: a database for tissue-specific gene expression and regulation

(2008) Xiong Liu et al.   BMC BIOINFORMATICS

A comprehensive functional analysis of tissue specificity of human gene expression

(2008) Zoltan Dezso et al.   BMC BIOLOGY

How many human genes can be defined as housekeeping with current expression data?

(2008) Jiang Zhu et al.   BMC GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes

(2008) K. Lage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular imaging of proteins in tissues by mass spectrometry

(2008) E. H. Seeley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the nature of human housekeeping genes

(2008) Jiang Zhu et al.   TRENDS IN GENETICS

Text-mining assisted regulatory annotation

(2008) Stein Aerts et al.   GENOME BIOLOGY