Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma
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Title
Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma
Authors
Keywords
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Journal
PLoS One
Volume 10, Issue 8, Pages e0135643
Publisher
Public Library of Science (PLoS)
Online
2015-08-12
DOI
10.1371/journal.pone.0135643
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Note: Only part of the references are listed.- Evidence for frequent and tissue-specific sequence heteroplasmy in human mitochondrial DNA
- (2015) Jana Naue et al. MITOCHONDRION
- Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations
- (2015) Mingkun Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mutational patterns in the breast cancer mitochondrial genome, with clinical correlates
- (2014) Sarah McMahon et al. CARCINOGENESIS
- Use of stereotypical mutational motifs to define resolution limits for the ultra-deep resequencing of mitochondrial DNA
- (2014) Kristian Gardner et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- MitImpact: an Exhaustive Collection of Pre-computed Pathogenicity Predictions of Human Mitochondrial Non-synonymous Variants
- (2014) Stefano Castellana et al. HUMAN MUTATION
- Unambiguous Detection of Multiple TP53 Gene Mutations in AAN-Associated Urothelial Cancer in Belgium Using Laser Capture Microdissection
- (2014) Selda Aydin et al. PLoS One
- Tissue-specific mitochondrial heteroplasmy at position 16,093 within the same individual
- (2013) Kaarel Krjutškov et al. CURRENT GENETICS
- Concept for estimating mitochondrial DNA haplogroups using a maximum likelihood approach (EMMA)
- (2013) Alexander W. Röck et al. Forensic Science International-Genetics
- Genetic relationship between multiple squamous cell carcinomas arising in the oral cavity
- (2013) Lucio Montebugnoli et al. HEAD AND NECK-JOURNAL FOR THE SCIENCES AND SPECIALTIES OF THE HEAD AND NECK
- Transition to Next Generation Analysis of the Whole Mitochondrial Genome: A Summary of Molecular Defects
- (2013) Sha Tang et al. HUMAN MUTATION
- Accumulation of mutations over the complete mitochondrial genome in tobacco-related oral cancer from northeast India
- (2013) Rosy Mondal et al. Mitochondrial DNA
- Mitochondrial DNA Copy Number and Risk of Oral Cancer: A Report from Northeast India
- (2013) Rosy Mondal et al. PLoS One
- Clinical Significance in Oral Cavity Squamous Cell Carcinoma of Pathogenic Somatic Mitochondrial Mutations
- (2013) Chih-Hsiung Lai et al. PLoS One
- Frequency and Pattern of Heteroplasmy in the Complete Human Mitochondrial Genome
- (2013) Amanda Ramos et al. PLoS One
- Mitochondrial DNA Genetics and the Heteroplasmy Conundrum in Evolution and Disease
- (2013) D. C. Wallace et al. Cold Spring Harbor Perspectives in Biology
- Recurrent Tissue-Specific mtDNA Mutations Are Common in Humans
- (2013) David C. Samuels et al. PLoS Genetics
- Cloudgene: A graphical execution platform for MapReduce programs on private and public clouds
- (2012) Sebastian Schönherr et al. BMC BIOINFORMATICS
- Comprehensive One-Step Molecular Analyses of Mitochondrial Genome by Massively Parallel Sequencing
- (2012) W. Zhang et al. CLINICAL CHEMISTRY
- A Combined Functional Annotation Score for Non-Synonymous Variants
- (2012) Margarida C. Lopes et al. HUMAN HEREDITY
- Mitochondrial DNA heteroplasmy in diabetes and normal adults: role of acquired and inherited mutational patterns in twins
- (2012) Gal Avital et al. HUMAN MOLECULAR GENETICS
- Universal heteroplasmy of human mitochondrial DNA
- (2012) B. A. I. Payne et al. HUMAN MOLECULAR GENETICS
- Predicting the Functional, Molecular, and Phenotypic Consequences of Amino Acid Substitutions using Hidden Markov Models
- (2012) Hashem A. Shihab et al. HUMAN MUTATION
- Variation in germline mtDNA heteroplasmy is determined prenatally but modified during subsequent transmission
- (2012) Christoph Freyer et al. NATURE GENETICS
- Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs
- (2012) Mingkun Li et al. NUCLEIC ACIDS RESEARCH
- Improving the Assessment of the Outcome of Nonsynonymous SNVs with a Consensus Deleteriousness Score, Condel
- (2011) Abel González-Pérez et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Improving SNP discovery by base alignment quality
- (2011) H. Li BIOINFORMATICS
- Mitochondrial DNA mutations in head and neck cancer are infrequent and lack prognostic utility
- (2011) C Challen et al. BRITISH JOURNAL OF CANCER
- High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences
- (2011) Anna Schönberg et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- Cancerization of cutaneous flap reconstruction for oral squamous cell carcinoma: report of three cases studied with the mtDNA D-loop sequence analysis
- (2011) Maria P Foschini et al. HISTOPATHOLOGY
- Somatic Mutations throughout the Entire Mitochondrial Genome Are Associated with Elevated PSA Levels in Prostate Cancer Patients
- (2010) Anita Kloss-Brandstätter et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Detecting Heteroplasmy from High-Throughput Sequencing of Complete Human Mitochondrial DNA Genomes
- (2010) Mingkun Li et al. AMERICAN JOURNAL OF HUMAN GENETICS
- A mechanistic view of human mitochondrial DNA polymerase γ: Providing insight into drug toxicity and mitochondrial disease
- (2010) Christopher M. Bailey et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- eCOMPAGT integrates mtDNA: import, validation and export of mitochondrial DNA profiles for population genetics, tumour dynamics and genotype-phenotype association studies
- (2010) Hansi Weißensteiner et al. BMC BIOINFORMATICS
- Accumulation of mutations over the entire mitochondrial genome of breast cancer cells obtained by tissue microdissection
- (2010) Liane Fendt et al. BREAST CANCER RESEARCH AND TREATMENT
- HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups
- (2010) Anita Kloss-Brandstätter et al. HUMAN MUTATION
- MitoTool: A web server for the analysis and retrieval of human mitochondrial DNA sequence variations
- (2010) Long Fan et al. MITOCHONDRION
- Heteroplasmic mitochondrial DNA mutations in normal and tumour cells
- (2010) Yiping He et al. NATURE
- A method and server for predicting damaging missense mutations
- (2010) Ivan A Adzhubei et al. NATURE METHODS
- Revision of the mtDNA tree and corresponding haplogroup nomenclature
- (2010) M. van Oven PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock
- (2009) Pedro Soares et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Automated inference of molecular mechanisms of disease from amino acid substitutions
- (2009) B. Li et al. BIOINFORMATICS
- Inferring relative proportions of DNA variants from sequencing electropherograms
- (2009) I. M. Carr et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Detection of nonneutral substitution rates on mammalian phylogenies
- (2009) K. S. Pollard et al. GENOME RESEARCH
- Sexual behaviours and the risk of head and neck cancers: a pooled analysis in the International Head and Neck Cancer Epidemiology (INHANCE) consortium
- (2009) Julia E Heck et al. INTERNATIONAL JOURNAL OF EPIDEMIOLOGY
- Investigation of Heteroplasmy in the Human Mitochondrial DNA Control Region: A Synthesis of Observations from More Than 5000 Global Population Samples
- (2009) Jodi A. Irwin et al. JOURNAL OF MOLECULAR EVOLUTION
- Genetic and molecular alterations associated with oral squamous cell cancer (Review)
- (2009) Pérez-Sayáns ONCOLOGY REPORTS
- Disulfide Formation in the ER and Mitochondria: Two Solutions to a Common Process
- (2009) J. Riemer et al. SCIENCE
- Mitochondrial DNA Mutations in Cancer: A Review
- (2008) Cristina Santos et al. CURRENT TOPICS IN MEDICINAL CHEMISTRY
- MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences
- (2008) Marty C. Brandon et al. HUMAN MUTATION
- Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
- (2008) Mannis van Oven et al. HUMAN MUTATION
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