Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis

(2016) Rik Kooke et al.   PLANT PHYSIOLOGY

Meta-analysis of Correlated Traits via Summary Statistics from GWASs with an Application in Hypertension

(2015) Xiaofeng Zhu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

From phenotypes to causal sequences: using genome wide association studies to dissect the sequence basis for variation of plant development

(2015) Takehiko Ogura et al.   CURRENT OPINION IN PLANT BIOLOGY

Combined biotic and abiotic stress resistance in tomato

(2015) Christos Kissoudis et al.   EUPHYTICA

Genome-Wide Association Mapping of Fertility Reduction upon Heat Stress Reveals Developmental Stage-Specific QTLs inArabidopsis thaliana

(2015) Johanna A. Bac-Molenaar et al.   PLANT CELL

High-throughput phenotyping of plant resistance to aphids by automated video tracking

(2015) Karen J Kloth et al.   Plant Methods

Natural Genetic Variation for Acclimation of Photosynthetic Light Use Efficiency to Growth Irradiance in Arabidopsis

(2015) Roxanne van Rooijen et al.   PLANT PHYSIOLOGY

Maturation of nematode-induced galls in Medicago truncatula is related to water status and primary metabolism modifications

(2015) Fabien Baldacci-Cresp et al.   PLANT SCIENCE

Coselected genes determine adaptive variation in herbivore resistance throughout the native range ofArabidopsis thaliana

(2015) Benjamin Brachi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tuning plant signaling and growth to survive salt

(2015) Magdalena M. Julkowska et al.   TRENDS IN PLANT SCIENCE

Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness

(2015) Rachel Kerwin et al.   eLife

Genetic resources for quantitative trait analysis: novelty and efficiency in design from an Arabidopsis perspective

(2014) Cris L Wijnen et al.   CURRENT OPINION IN PLANT BIOLOGY

Phenotyping and beyond: modelling the relationships between traits

(2014) Christine Granier et al.   CURRENT OPINION IN PLANT BIOLOGY

Tolerance of wheat to vegetative stage soil waterlogging is conditioned by both constitutive and adaptive QTL

(2014) Diana C. Ballesteros et al.   EUPHYTICA

Marker-Based Estimation of Heritability in Immortal Populations

(2014) Willem Kruijer et al.   GENETICS

Efficient multivariate linear mixed model algorithms for genome-wide association studies

(2014) Xiang Zhou et al.   NATURE METHODS

Abiotic and biotic stress combinations

(2014) Nobuhiro Suzuki et al.   NEW PHYTOLOGIST

A step towards understanding plant responses to multiple environmental stresses: a genome-wide study

(2014) NASSER SEWELAM et al.   PLANT CELL AND ENVIRONMENT

Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response ofArabidopsis thalianato drought

(2014) MOHAMED EL-SODA et al.   PLANT CELL AND ENVIRONMENT

The Art of Being Flexible: How to Escape from Shade, Salt, and Drought

(2014) Ronald Pierik et al.   PLANT PHYSIOLOGY

Salt stress-induced Ca2+ waves are associated with rapid, long-distance root-to-shoot signaling in plants

(2014) W.-G. Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting the future of plant breeding: complementing empirical evaluation with genetic prediction

(2014) Mark Cooper et al.   Crop & Pasture Science

Enhancing crop resilience to combined abiotic and biotic stress through the dissection of physiological and molecular crosstalk

(2014) Christos Kissoudis et al.   Frontiers in Plant Science

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Plant Interactions with Multiple Insect Herbivores: From Community to Genes

(2013) Jeltje M. Stam et al.   Annual Review of Plant Biology

Improving Hierarchical Clustering of Genotypic Data via Principal Component Analysis

(2013) T. L. Odong et al.   CROP SCIENCE

GLUTAMATE RECEPTOR-LIKE genes mediate leaf-to-leaf wound signalling

(2013) Seyed A. R. Mousavi et al.   NATURE

The combined effect of salinity and heat reveals a specific physiological, biochemical and molecular response in tomato plants

(2013) ROSA M. RIVERO et al.   PLANT CELL AND ENVIRONMENT

Enhancement of root hydraulic conductivity by methyl jasmonate and the role of calcium and abscisic acid in this process

(2013) BEATRIZ SÁNCHEZ-ROMERA et al.   PLANT CELL AND ENVIRONMENT

A missense mutation in CHS1, a TIR-NB protein, induces chilling sensitivity in Arabidopsis

(2013) Yuancong Wang et al.   PLANT JOURNAL

A TIR-NBS protein encoded by ArabidopsisChilling Sensitive 1(CHS1) limits chloroplast damage and cell death at low temperature

(2013) Anna Maria Zbierzak et al.   PLANT JOURNAL

The Arabidopsis Cyclic Nucleotide-Gated Ion Channels AtCNGC2 and AtCNGC4 Work in the Same Signaling Pathway to Regulate Pathogen Defense and Floral Transition

(2013) K. Chin et al.   PLANT PHYSIOLOGY

Simultaneous Application of Heat, Drought, and Virus to Arabidopsis Plants Reveals Significant Shifts in Signaling Networks

(2013) C. M. Prasch et al.   PLANT PHYSIOLOGY

Transcriptome Responses to Combinations of Stresses in Arabidopsis

(2013) S. Rasmussen et al.   PLANT PHYSIOLOGY

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

(2013) A. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-trait and multi-environment QTL analyses of yield and a set of physiological traits in pepper

(2013) N. A. Alimi et al.   THEORETICAL AND APPLIED GENETICS

The statistical analysis of multi-environment data: modeling genotype-by-environment interaction and its genetic basis

(2013) Marcos Malosetti et al.   Frontiers in Physiology

Genome-wide association mapping of flowering time inArabidopsis thalianain nature: genetics for underlying components and reaction norms across two successive years

(2013) Benjamin Brachi et al.   ACTA BOTANICA GALLICA

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Cooperation of three WRKY-domain transcription factors WRKY18, WRKY40, and WRKY60 in repressing two ABA-responsive genes ABI4 and ABI5 in Arabidopsis

(2012) Zhi-Qiang Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Asg1 is a stress-inducible gene which increases stomatal resistance in salt stressed potato

(2012) Giorgia Batelli et al.   JOURNAL OF PLANT PHYSIOLOGY

Auxin regulates aquaporin function to facilitate lateral root emergence

(2012) Benjamin Péret et al.   NATURE CELL BIOLOGY

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Arginase Induction Represses Gall Development During Clubroot Infection in Arabidopsis

(2012) Antoine Gravot et al.   PLANT AND CELL PHYSIOLOGY

Root-Derived Oxylipins Promote Green Peach Aphid Performance onArabidopsisFoliage

(2012) Vamsi J. Nalam et al.   PLANT CELL

Historical genomics of North American maize

(2012) J. van Heerwaarden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maximizing genetic differentiation in core collections by PCA-based clustering of molecular marker data

(2012) Joost van Heerwaarden et al.   THEORETICAL AND APPLIED GENETICS

Genome-Wide Association Studies Identify Heavy Metal ATPase3 as the Primary Determinant of Natural Variation in Leaf Cadmium in Arabidopsis thaliana

(2012) Dai-Yin Chao et al.   PLoS Genetics

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress

(2011) Han Chen et al.   BMC PLANT BIOLOGY

Differential disease resistance response in the barley necrotic mutant nec1

(2011) Anete Keisa et al.   BMC PLANT BIOLOGY

Molecular and genetic characterization of the gene family encoding the voltage-dependent anion channel in Arabidopsis

(2011) Chika Tateda et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis growth under prolonged high temperature and water deficit: independent or interactive effects?

(2011) DENIS VILE et al.   PLANT CELL AND ENVIRONMENT

MES16, a Member of the Methylesterase Protein Family, Specifically Demethylates Fluorescent Chlorophyll Catabolites during Chlorophyll Breakdown in Arabidopsis

(2011) B. Christ et al.   PLANT PHYSIOLOGY

Genetic Engineering for Modern Agriculture: Challenges and Perspectives

(2010) Ron Mittler et al.   Annual Review of Plant Biology

Detection and use of QTL for complex traits in multiple environments

(2010) Fred A van Eeuwijk et al.   CURRENT OPINION IN PLANT BIOLOGY

Arabinosylated glycopeptide hormones: new insights into CLAVATA3 structure

(2010) Hidefumi Shinohara et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

(2010) Joy Bergelson et al.   NATURE REVIEWS GENETICS

Polycomb proteins regulate the quantitative induction of VERNALIZATION INSENSITIVE 3 in response to low temperatures

(2010) E. Jean Finnegan et al.   PLANT JOURNAL

Transcriptional reprogramming regulated by WRKY18 and WRKY40 facilitates powdery mildew infection of Arabidopsis

(2010) Shree P. Pandey et al.   PLANT JOURNAL

Variation of Herbivore-Induced Volatile Terpenes among Arabidopsis Ecotypes Depends on Allelic Differences and Subcellular Targeting of Two Terpene Synthases, TPS02 and TPS03

(2010) M. Huang et al.   PLANT PHYSIOLOGY

Distinct cinnamoyl CoA reductases involved in parallel routes to lignin inMedicago truncatula

(2010) Rui Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple stress factors and the emission of plant VOCs

(2010) Jarmo K. Holopainen et al.   TRENDS IN PLANT SCIENCE

The Scale of Population Structure in Arabidopsis thaliana

(2010) Alexander Platt et al.   PLoS Genetics

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Pathogen inducible voltage-dependent anion channel (AtVDAC) isoforms are localized to mitochondria membrane in Arabidopsis

(2009) Sang Min Lee et al.   MOLECULES AND CELLS

Networking by small-molecule hormones in plant immunity

(2009) Corné M J Pieterse et al.   Nature Chemical Biology

What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation?

(2009) C. Alonso-Blanco et al.   PLANT CELL

VERNALIZATION INSENSITIVE 3(VIN3) is required for the response ofArabidopsis thalianaseedlings exposed to low oxygen conditions

(2009) Donna M. Bond et al.   PLANT JOURNAL

Up-regulation ofLSB1/GDU3affects geminivirus infection by activating the salicylic acid pathway

(2009) Hao Chen et al.   PLANT JOURNAL

Antagonism between salicylic and abscisic acid reflects early host-pathogen conflict and moulds plant defence responses

(2009) Marta de Torres Zabala et al.   PLANT JOURNAL

Divergent functions of three Candida albicans zinc-cluster transcription factors (CTA4, ASG1 and CTF1) complementing pleiotropic drug resistance in Saccharomyces cerevisiae

(2008) A. T. Coste et al.   MICROBIOLOGY-SGM

Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense

(2008) K.-C. Kim et al.   PLANT CELL

PKS1 plays a role in red-light-based positive phototropism in roots

(2008) MARIA LIA MOLAS et al.   PLANT CELL AND ENVIRONMENT

Differential Regulation of Root Arginine Catabolism and Polyamine Metabolism in Clubroot-Susceptible and Partially Resistant Arabidopsis Genotypes

(2008) M. Jubault et al.   PLANT PHYSIOLOGY

Plant Immunity to Insect Herbivores

(2007) Gregg A. Howe et al.   Annual Review of Plant Biology

Parasitism by Cuscuta pentagona Attenuates Host Plant Defenses against Insect Herbivores

(2007) J. B. Runyon et al.   PLANT PHYSIOLOGY