Synthetic circuit for exact adaptation and fold-change detection

Transient dynamic phenotypes as criteria for model discrimination: fold-change detection in Rhodobacter sphaeroides chemotaxis

(2013) A. Hamadeh et al.   Journal of the Royal Society Interface

Response kinetics in the complex chemotaxis signalling pathway of Rhodobacter sphaeroides

(2013) M. Kojadinovic et al.   Journal of the Royal Society Interface

The Utility of Paradoxical Components in Biological Circuits

(2013) Yuval Hart et al.   MOLECULAR CELL

Synthetic analog computation in living cells

(2013) Ramiz Daniel et al.   NATURE

Predator–Prey Molecular Ecosystems

(2012) Teruo Fujii et al.   ACS Nano

Nucleic acids for the rational design of reaction circuits

(2012) Adrien Padirac et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genetic programs constructed from layered logic gates in single cells

(2012) Tae Seok Moon et al.   NATURE

A mechanical metamaterial made from a DNA hydrogel

(2012) Jong Bum Lee et al.   Nature Nanotechnology

RNase E: at the interface of bacterial RNA processing and decay

(2012) George A. Mackie   NATURE REVIEWS MICROBIOLOGY

Active, motor-driven mechanics in a DNA gel

(2012) O. J. N. Bertrand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noninvasive inference of the molecular chemotactic response using bacterial trajectories

(2012) J.-B. Masson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

Incoherent Feedforward Control Governs Adaptation of Activated Ras in a Eukaryotic Chemotaxis Pathway

(2012) K. Takeda et al.   Science Signaling

Ensemble Bayesian Analysis of Bistability in a Synthetic Transcriptional Switch

(2012) Pakpoom Subsoontorn et al.   ACS Synthetic Biology

A Characterization of Scale Invariant Responses in Enzymatic Networks

(2012) Maja Skataric et al.   PLoS Computational Biology

Synthetic in vitro transcriptional oscillators

(2011) J. Kim et al.   Molecular Systems Biology

Programming an in vitro DNA oscillator using a molecular networking strategy

(2011) K. Montagne et al.   Molecular Systems Biology

Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template

(2011) L. Bleris et al.   Molecular Systems Biology

Neural network computation with DNA strand displacement cascades

(2011) Lulu Qian et al.   NATURE

Dynamic DNA nanotechnology using strand-displacement reactions

(2011) David Yu Zhang et al.   Nature Chemistry

Timing molecular motion and production with a synthetic transcriptional clock

(2011) E. Franco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Response rescaling in bacterial chemotaxis

(2011) M. D. Lazova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Noncooperative Interactions between Transcription Factors and Clustered DNA Binding Sites Enable Graded Transcriptional Responses to Environmental Inputs

(2010) Luca Giorgetti et al.   MOLECULAR CELL

Fold-change detection and scalar symmetry of sensory input fields

(2010) O. Shoval et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA as a universal substrate for chemical kinetics

(2010) D. Soloveichik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defining Network Topologies that Can Achieve Biochemical Adaptation

(2009) Wenzhe Ma et al.   CELL

Control of DNA Strand Displacement Kinetics Using Toehold Exchange

(2009) David Yu Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Dynamics and Variability of ERK2 Response to EGF in Individual Living Cells

(2009) Cellina Cohen-Saidon et al.   MOLECULAR CELL

The Incoherent Feedforward Loop Can Provide Fold-Change Detection in Gene Regulation

(2009) Lea Goentoro et al.   MOLECULAR CELL

Modeling the chemotactic response of Escherichia coli to time-varying stimuli

(2008) Y. Tu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA