m1A and m1G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
m1A and m1G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs
Authors
Keywords
-
Journal
NATURE STRUCTURAL & MOLECULAR BIOLOGY
Volume 23, Issue 9, Pages 803-810
Publisher
Springer Nature
Online
2016-08-02
DOI
10.1038/nsmb.3270
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A methylation-switchable conformational probe for the sensitive and selective detection of RNA demethylase activity
- (2016) Tianming Yang et al. CHEMICAL COMMUNICATIONS
- Adaptive Response Enzyme AlkB Preferentially Repairs 1-Methylguanine and 3-Methylthymine Adducts in Double-Stranded DNA
- (2016) Fangyi Chen et al. CHEMICAL RESEARCH IN TOXICOLOGY
- Additive CHARMM force field for naturally occurring modified ribonucleotides
- (2016) You Xu et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- A dynamic look backward and forward
- (2016) Arthur G. Palmer JOURNAL OF MAGNETIC RESONANCE
- The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA
- (2016) Dan Dominissini et al. NATURE
- Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome
- (2016) Xiaoyu Li et al. Nature Chemical Biology
- Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets
- (2016) Gunaseelan Goldsmith et al. PLoS One
- Visualizing the formation of an RNA folding intermediate through a fast highly modular secondary structure switch
- (2016) Yi Xue et al. Nature Communications
- Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings
- (2015) Loïc Salmon et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Structure and Thermodynamics of N6-Methyladenosine in RNA: A Spring-Loaded Base Modification
- (2015) Caroline Roost et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations
- (2015) Andrew P. Longhini et al. NUCLEIC ACIDS RESEARCH
- New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey
- (2015) Huiqing Zhou et al. NUCLEIC ACIDS RESEARCH
- Increasing occurrences and functional roles for high energy purine-pyrimidine base-pairs in nucleic acids
- (2014) Isaac Kimsey et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Ribonucleotides in DNA: Origins, repair and consequences
- (2014) Jessica S. Williams et al. DNA REPAIR
- Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange
- (2014) Jameson R. Bothe et al. JOURNAL OF MAGNETIC RESONANCE
- How a Low-Fidelity DNA Polymerase Chooses Non-Watson–Crick from Watson–Crick Incorporation
- (2014) Wen-Jin Wu et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Insights into RNA structure and function from genome-wide studies
- (2014) Stefanie A. Mortimer et al. NATURE REVIEWS GENETICS
- The dynamic epitranscriptome: N6-methyladenosine and gene expression control
- (2014) Kate D. Meyer et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Invisible RNA state dynamically couples distant motifs
- (2014) Janghyun Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Double-stranded RNA under force and torque: Similarities to and striking differences from double-stranded DNA
- (2014) J. Lipfert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics
- (2014) Heidi S. Alvey et al. Nature Communications
- Characterizing the Protonation State of Cytosine in Transient G·C Hoogsteen Base Pairs in Duplex DNA
- (2013) Evgenia N. Nikolova et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Unusual base pairing during the decoding of a stop codon by the ribosome
- (2013) Israel S. Fernández et al. NATURE
- NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers
- (2013) A. Sekhar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Using chemical shift perturbation to characterise ligand binding
- (2013) Mike P. Williamson PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
- Solution Structure of the Dickerson DNA Dodecamer Containing a Single Ribonucleotide
- (2012) Eugene F. DeRose et al. BIOCHEMISTRY
- Structure of human DNA polymerase iota and the mechanism of DNA synthesis
- (2012) A. V. Makarova et al. BIOCHEMISTRY-MOSCOW
- Chemical Shifts in Nucleic Acids Studied by Density Functional Theory Calculations and Comparison with Experiment
- (2012) Judith M. Fonville et al. CHEMISTRY-A EUROPEAN JOURNAL
- Probing Transient Hoogsteen Hydrogen Bonds in Canonical Duplex DNA Using NMR Relaxation Dispersion and Single-Atom Substitution
- (2012) Evgenia N. Nikolova et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Synthesis of (6-13C)Pyrimidine Nucleotides as Spin-Labels for RNA Dynamics
- (2012) Christoph H. Wunderlich et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Enhanced Base-Pair Opening in the Adenine Tract of a RNA Double Helix
- (2011) Yuegao Huang et al. BIOCHEMISTRY
- Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA
- (2011) Elizabeth J. Denning et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Transient Hoogsteen base pairs in canonical duplex DNA
- (2011) Evgenia N. Nikolova et al. NATURE
- Genome-wide measurement of RNA secondary structure in yeast
- (2010) Michael Kertesz et al. NATURE
- Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs
- (2010) Malka Kitayner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Structure determination of DNA methylation lesions N 1 -meA and N 3 -meC in duplex DNA using a cross-linked protein–DNA system
- (2010) Lianghua Lu et al. NUCLEIC ACIDS RESEARCH
- Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs
- (2010) M. Saikia et al. RNA
- Effect of 1-methyladenine on thermodynamic stabilities of double-helical DNA structures
- (2009) Hao Yang et al. FEBS LETTERS
- CHARMM: The biomolecular simulation program
- (2009) B. R. Brooks et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Extending the Range of Microsecond-to-Millisecond Chemical Exchange Detected in Labeled and Unlabeled Nucleic Acids by Selective Carbon R1ρNMR Spectroscopy
- (2009) Alexandar L. Hansen et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Effect of 1-methyladenine on double-helical DNA structures
- (2008) Hao Yang et al. FEBS LETTERS
- 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
- (2008) Xiang-Jun Lu et al. Nature Protocols
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started